Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0903 ATGTTGCCCTGCGATTACTGCCACTCCAAACCCGCCTTACTCTTCTGCCGACCCGACTCCGCCAAACTCTGTCTCCTCTGCGACCACCACGTCCACACCGCTAACGCCCTCTCCCTCAAGCACGTCCGCTTCCAGATTTGCGCCAACTGCGACACCGCCGCCACCGTCCGCTGCTCCGCCCACAATCTCCTCCTCTGTCACACCTGCGACCTCGACGCTCACGCCAACGCCCCCGCTTCCCTCCACCACCGCCACCGCCTCCACGGCTTCTCTGGCTGCCCCTCCCTCCCCGAGATGGCCTCCGCCCTCGGCCTCGATTTGCGGCCCCGCCACTCCAACTGCCGCGACGAGGTCTACGAGCAGGTCCTCGAAGTCGCGCGCAGGAGGAACGAGAACGAGTTTCTGTGCGCTGAGACCGGGGAATTCAGGTTCGACTCCGAAAACGACGTCGTCGATGAGATGTTGCTGCAGCAGACGCCGTTCACGTCCTTGCTCGGGATGCCCGATTCCCAATCTGAATTTGACGCCGCCAAAAGTAACGATAACGGTTACGGAGGCCAAGCAGGAGATCTTCACTGGAGTTTTGATCCCAACTATCAGTCTCCTCAGGTGTGGGATTTTCAATTACAGAAATCAAGAGGTTGTGATGAACCAAGAGTGGTGACATTTGATGGTCTAGAAGTTCCAAAATCATTTCAGGATGTGCACAATATGAATTACTCGACTGGTGATGATATTCTATCAAGAAATAACCAATCGGATCAGTCATCATCAAGCCACGCAAAGAAGAAAGAAGAAAGCAACAAGGAAGCTAGAGGTGGGTTATCAACAGAGTCCAAATTGTTAGAATCCATACCGTATAGTGCCACCAACAACGTGGTAGTCATGGAGAATCTAGTGGGTGGGAATGCAAATGTTAGCACCTTACAAGCCAGGGTTAGCTTGGAAGAGTTGGCTAAGAATAGAGGTGATGCCATGTTACGCTACAAAGAGAAGAAGAAATCTCGAAGGTATGATAAGCACATTCGCTATGAATCAAGAAAGGCCAGGGCTGATACTAGAAAGAGGGTGAGAGGGAGATTTGTGAAGGCAAATGAGATTCAAGCGTGA 1110 0.5261 MLPCDYCHSKPALLFCRPDSAKLCLLCDHHVHTANALSLKHVRFQICANCDTAATVRCSAHNLLLCHTCDLDAHANAPASLHHRHRLHGFSGCPSLPEMASALGLDLRPRHSNCRDEVYEQVLEVARRRNENEFLCAETGEFRFDSENDVVDEMLLQQTPFTSLLGMPDSQSEFDAAKSNDNGYGGQAGDLHWSFDPNYQSPQVWDFQLQKSRGCDEPRVVTFDGLEVPKSFQDVHNMNYSTGDDILSRNNQSDQSSSSHAKKKEESNKEARGGLSTESKLLESIPYSATNNVVVMENLVGGNANVSTLQARVSLEELAKNRGDAMLRYKEKKKSRRYDKHIRYESRKARADTRKRVRGRFVKANEIQA* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0903 369 ProSiteProfiles CCT domain profile. 322 364 IPR010402 GO:0005515
Pvu1g0903 369 CDD Bbox1_BBX-like 3 46 - -
Pvu1g0903 369 ProSiteProfiles Zinc finger B-box type profile. 1 46 IPR000315 GO:0008270
Pvu1g0903 369 MobiDBLite consensus disorder prediction 237 277 - -
Pvu1g0903 369 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 14-RELATED 2 367 - -
Pvu1g0903 369 MobiDBLite consensus disorder prediction 258 273 - -
Pvu1g0903 369 SMART bboxneu5 1 46 IPR000315 GO:0008270
Pvu1g0903 369 SMART bboxneu5 47 87 IPR000315 GO:0008270
Pvu1g0903 369 Pfam CCT motif 322 364 IPR010402 GO:0005515
Pvu1g0903 369 MobiDBLite consensus disorder prediction 237 257 - -
Pvu1g0903 369 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0903 Pvu-Chr1 15625709 15629542 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0903 1 366 C2C2-CO-like Transcription Factor Family AT2G33500 34.375 2.64e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Pvu1g0903 CCT 1.8e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0903 - - gmx:100786838 540.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0903 1 15625709 15629542 Pvu1g0903 1 15625709 15629542 ECH