Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0898 ATGATGATGGATCAGCGACAGCGAGAGAAACTGCTTCACAAAACCGAGGCCTGTGCTTTCGTGGCAGGTGTTGATGCCGAGCTTCGACTTGTCGCCGCCCCAGGGGACATCACCAACACCAACAACGTTAACAGGATCATCAACAGCACCAGCAGCAACGTATCTCAATCTCACGGGTCGGGTCGGATCCACGACACCAACCACCTTGGTCTCGTCGCTGCGGTTACCAACCTCGGAACTGTTCACAGGAAGAAGAGGATGCCCCGGCAGCGAAGATCCACCACCACCTCCACCACCAACCCCACCTTGTTTATGCAGATGCACCACTTCGACAACCCTTTCTCCTCTAAGCACCACCAGCCTAATTTACCATCTTCAACTCCCTCCGCCTCCTCGCACGTGCCATCCTCCTCTCTCCACTCTGTTAAACCCTCCACTCCTCCCCCGCCTGCACGTAAAGCAGCAGAGACTTTCCTTCCAGCACTGGATTCAAAAGAAGGAATTTTGATGAACATGGACGATAAAGATGGTACTCATGTGTGGAATTTCAAGTACAGGTTTTGGCCAAACAACAACAGTAGGATGTACGTACTTGAAAACACAGGAGAATTTGTCAGCACACATGGTCTTCGATTTGGCGATACCATCGTGGTTTACCAACATATTGAAAACAATAACTATGTTATTCAAGCTAGAAAAGGCTCGGAGGAGGATGAATTTATGGAACAAAGTAGTGAGACAGTGGACGACATGTTCCTGAGTGACTTGGAGGTGAACAAACCAGGTTGTTTCAATATAAACTATCCTGCAGTGAATGATACTGGCATGTCCTTCATATATGACACTACTTTCTCAAATGACTCCCCACTTGACTTTTTGGGTGGATCAATGACTAATCTTTCAAGGATTGGACCAGTTGAAACCTTTGGTTCTGTTGAGAATTTGTCCCTTGATGACTTCTATTAA 966 0.4741 MMMDQRQREKLLHKTEACAFVAGVDAELRLVAAPGDITNTNNVNRIINSTSSNVSQSHGSGRIHDTNHLGLVAAVTNLGTVHRKKRMPRQRRSTTTSTTNPTLFMQMHHFDNPFSSKHHQPNLPSSTPSASSHVPSSSLHSVKPSTPPPPARKAAETFLPALDSKEGILMNMDDKDGTHVWNFKYRFWPNNNSRMYVLENTGEFVSTHGLRFGDTIVVYQHIENNNYVIQARKGSEEDEFMEQSSETVDDMFLSDLEVNKPGCFNINYPAVNDTGMSFIYDTTFSNDSPLDFLGGSMTNLSRIGPVETFGSVENLSLDDFY* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0898 321 Pfam B3 DNA binding domain 158 233 IPR003340 GO:0003677
Pvu1g0898 321 SUPERFAMILY DNA-binding pseudobarrel domain 153 231 IPR015300 -
Pvu1g0898 321 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR FUS3 153 321 - -
Pvu1g0898 321 SMART B3_2 141 235 IPR003340 GO:0003677
Pvu1g0898 321 MobiDBLite consensus disorder prediction 92 106 - -
Pvu1g0898 321 Gene3D - 150 248 IPR015300 -
Pvu1g0898 321 MobiDBLite consensus disorder prediction 116 141 - -
Pvu1g0898 321 MobiDBLite consensus disorder prediction 82 153 - -
Pvu1g0898 321 CDD B3_DNA 152 233 IPR003340 GO:0003677
Pvu1g0898 321 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 153 321 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0898 Pvu-Chr1 15530486 15533635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0898 42 321 B3 DNA Binding Superfamily AT3G26790 42.089 4.97e-64 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu1g0898 B3 1.9e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0898 - - var:108328256 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0898 1 15530486 15533635 Pvu1g0898 1 15530486 15533635 ECH