Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0895 ATGGACAACCGAAACGTTGTTGTCTGCGACAACGGAACCGGGTATGTGAAGTGTGGATTTTCTGGGGAGAATTTCCCCACATCGGTCTTTCCTTGTGTAGTGGGAAGGCCAATGCTCCATTACGAAGAATCACTTACCGAACAAGAGCTTAAGGATATTGTTGTTGGCAAAAGTTGTGCAGATTTGCAACATCAGCTTGATGTATCTTATCCTCTGAACAACGGGATAGTGCAAAATTGGGATGATATGTGCCATGTATGGGATCATGCATTTTACAATGAATTGAAGATTAATCCTCCAGACTGTAAGATTCTACTCACCGATTCACCTCTTAATCCTTTGAAGAATATTGAAAAAATGGGTGAGATGATGTTTGAGAAGTACAATTTTGCTGGAGTGAATTTCCAAATCCAAGCTGTTTTGACATTATATGCTCAAGGTTTGTTGACTGGATTAGTTATTGAGTCCGGTGATGGTGTCATCCATGTGGTTCCTATTGTTGATGGTTGTCCTTACCCTCATATAAATAAACAAATGAACATTGCTGGTCGACATATAACCTCCTATCTTGTTGATTTGCTTTCAAGGAGAGGGTATGCATTAGATAGGACTACTGATTTTGAGACTGTTAGGGAAATCAAAGAGAAGCTATGCTATTTAAGTTACAACTACAAGAGGGAATACCAGTTGGGGATTGAGACCACCATCCTTGTTAAAAATTATACTTATGAATTTCTAGTTAAAATTCTTTTCCTAAAGATAGAGGGACAAAAGTCATGTTATGTTGATACTTCAATCTGTTCTTCAATGAATCTCAATTCCTATGCCTTTCAAAACTTTTGCTTCCGGATGGAAGGCATTAAAGTAGGCACCGAAAGGTTCCAAGCTCCTGAGGTTCTTTTCACTCCGGAACTTATAGATGTAGAAGGTGATGGAATGGCTGACATGGTTTTTCGCTGCATTCAGGAAATGGATATTGATAATCGGATGACGAGAGTTTGA 1002 0.3902 MDNRNVVVCDNGTGYVKCGFSGENFPTSVFPCVVGRPMLHYEESLTEQELKDIVVGKSCADLQHQLDVSYPLNNGIVQNWDDMCHVWDHAFYNELKINPPDCKILLTDSPLNPLKNIEKMGEMMFEKYNFAGVNFQIQAVLTLYAQGLLTGLVIESGDGVIHVVPIVDGCPYPHINKQMNIAGRHITSYLVDLLSRRGYALDRTTDFETVREIKEKLCYLSYNYKREYQLGIETTILVKNYTYEFLVKILFLKIEGQKSCYVDTSICSSMNLNSYAFQNFCFRMEGIKVGTERFQAPEVLFTPELIDVEGDGMADMVFRCIQEMDIDNRMTRV* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0895 333 PRINTS Actin signature 25 34 IPR004000 -
Pvu1g0895 333 PRINTS Actin signature 62 84 IPR004000 -
Pvu1g0895 333 PRINTS Actin signature 116 129 IPR004000 -
Pvu1g0895 333 PRINTS Actin signature 141 160 IPR004000 -
Pvu1g0895 333 PANTHER ACTIN-RELATED PROTEIN 2 1 243 - -
Pvu1g0895 333 PANTHER ACTIN-RELATED PROTEIN 2 286 331 - -
Pvu1g0895 333 Pfam Actin 2 329 IPR004000 -
Pvu1g0895 333 Gene3D - 7 138 - -
Pvu1g0895 333 Gene3D Actin; Chain A, domain 4 181 310 - -
Pvu1g0895 333 CDD NBD_sugar-kinase_HSP70_actin 7 190 - -
Pvu1g0895 333 Gene3D - 139 330 - -
Pvu1g0895 333 SUPERFAMILY Actin-like ATPase domain 149 330 IPR043129 -
Pvu1g0895 333 PANTHER ACTIN 286 331 IPR004000 -
Pvu1g0895 333 PANTHER ACTIN 1 243 IPR004000 -
Pvu1g0895 333 SUPERFAMILY Actin-like ATPase domain 2 154 IPR043129 -
Pvu1g0895 333 SMART actin_3 4 333 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0895 Pvu-Chr1 15468876 15474447 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0895 2 329 Cytoskeleton Gene Families AT3G18780 39.024 9.47e-81 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0895 K17260 - gmx:100803980 512.301