LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu1g0885	ATGATGGAGGGCTACACGCTTCCCGCACCACCCACTGAAGAGGACGCGCCACCACCGTCATGGGGTAGGCCCAATTCACAAGAAGAGGACATTGCCATTGCCTTGGGTGCCCCTCTTACCTTTAAATCCATGCTTCAACAACAACCTCAGCCACAACAACCACAACTTGACTCCTTCTTCAACTTCAACATCAACTCTGCAACTTCCATTCCCTTTGTTCCTAGTATGGAATCTTTCCCCCCTCTAGACCCCTTCTCACCTTCACTTCCACCACCTCCTTTCTTCAACACCAACACCAACACCTTGCCCTTTGACCCGGGCTTTGACATGGGCCTCGAGACTGGGCTTCACTCTTCATGTCCCCCTCTTTTCTCCCAGCTTCAGCAGGGCTTCAAGTTTGGAGAACTGGAAGCGCTGACTGCACCTGGGAATGTTCCGTTTTTGGACGGAGCAAAAGGGGACAACCCTCTTGAGAGGGTGCAGCCGACCCTTTACAGGAAGAGGAGGGGAACGGCGGAGATTCCGGGGCTGGAGACGGTGAGGAGGAAGGGGAGGAAGTGGGAGGAGGGGGAGGGGGAGGAAGGGAGTAGTGCTGACGTGGATGGTTCAGGGCTGAATTATGAGTCTGATGAGAATGATAATGGAAATAATGGTTTGAAGGGGAGTGAGAATGGTGGAGATCACAAGGGGAAGAGAAAGGGGTTGCCTGCTAAAAATCTCATGGCGGAGAGGCGCCGCAGGAAGAAGCTCAATGATCGGTTGTACATGCTCAGGTCTGTTGTGCCCAAGATTAGCAAGATGGATAGGGCTTCAATACTGGGGGATGCAATTGACTACCTGAAGGAGTTGCTGCAGCGGATTAATGATCTCCATAACGAACTGGAAATGACTTCGGCGGGCTCGTCGCTGCCACCATCTACTTCTACAAGCTTTCAGCCTCTAACACCCACCCTGCCAACCCTTCCCTGCAGGGTCAAGGAGGAACTGTATCCTGGCGCCTTGCCAAGCCCTAAAAATCAAGCTGCAAAGGTTGAAGTGAGAGTAAGAGAAGGGAGAGCTGTCAACATTCACATGTTTTGCACCCGCCGACCAGGCCTTTTGCTTTCTACCATGAGGGCTTTGGACAACCTTGGATTGGATGTACAGCAGGCTGTTATAAGCTGTTTCAACGGCTTTGCTTTAGATGTGTTTAAGGCTGAGTGCAGAGAAGGCCAGGATGTGCTTCCTGAGCAAATTAAAGCAGTGCTCTTGGATTCAGCAGGCTTTCATGGTATGATGTGA	1281	0.5168	MMEGYTLPAPPTEEDAPPPSWGRPNSQEEDIAIALGAPLTFKSMLQQQPQPQQPQLDSFFNFNINSATSIPFVPSMESFPPLDPFSPSLPPPPFFNTNTNTLPFDPGFDMGLETGLHSSCPPLFSQLQQGFKFGELEALTAPGNVPFLDGAKGDNPLERVQPTLYRKRRGTAEIPGLETVRRKGRKWEEGEGEEGSSADVDGSGLNYESDENDNGNNGLKGSENGGDHKGKRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELEMTSAGSSLPPSTSTSFQPLTPTLPTLPCRVKEELYPGALPSPKNQAAKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFKAECREGQDVLPEQIKAVLLDSAGFHGMM*	427

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pvu1g0885	426	PANTHER	TRANSCRIPTION FACTOR SCREAM2-RELATED	154	426	-	-
Pvu1g0885	426	PANTHER	BHLH TRANSCRIPTIONAL FACTOR	154	426	-	-
Pvu1g0885	426	SMART	finulus	240	289	IPR011598	GO:0046983
Pvu1g0885	426	MobiDBLite	consensus disorder prediction	207	221	-	-
Pvu1g0885	426	Gene3D	-	228	299	IPR036638	GO:0046983
Pvu1g0885	426	Coils	Coil	280	300	-	-
Pvu1g0885	426	Pfam	Helix-loop-helix DNA-binding domain	241	283	IPR011598	GO:0046983
Pvu1g0885	426	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	234	283	IPR011598	GO:0046983
Pvu1g0885	426	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	237	308	IPR036638	GO:0046983
Pvu1g0885	426	CDD	ACT_UUR-ACR-like	356	415	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu1g0885	Pvu-Chr1	15261013	15264731	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu1g0885	135	401	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT3G26744	65.343	2.12e-101	308

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Pvu1g0885		HLH	1.6e-09	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu1g0885	-		-	gmx:100804797	528.48

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu1g0885	1	15261013	15264731	Pvu1g0885	1	15261013	15264731	ECH
	Pvu1g0885	1	15261013	15264731	Pvu4g0754	4	10599717	10601311	PCT

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