Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0885 ATGATGGAGGGCTACACGCTTCCCGCACCACCCACTGAAGAGGACGCGCCACCACCGTCATGGGGTAGGCCCAATTCACAAGAAGAGGACATTGCCATTGCCTTGGGTGCCCCTCTTACCTTTAAATCCATGCTTCAACAACAACCTCAGCCACAACAACCACAACTTGACTCCTTCTTCAACTTCAACATCAACTCTGCAACTTCCATTCCCTTTGTTCCTAGTATGGAATCTTTCCCCCCTCTAGACCCCTTCTCACCTTCACTTCCACCACCTCCTTTCTTCAACACCAACACCAACACCTTGCCCTTTGACCCGGGCTTTGACATGGGCCTCGAGACTGGGCTTCACTCTTCATGTCCCCCTCTTTTCTCCCAGCTTCAGCAGGGCTTCAAGTTTGGAGAACTGGAAGCGCTGACTGCACCTGGGAATGTTCCGTTTTTGGACGGAGCAAAAGGGGACAACCCTCTTGAGAGGGTGCAGCCGACCCTTTACAGGAAGAGGAGGGGAACGGCGGAGATTCCGGGGCTGGAGACGGTGAGGAGGAAGGGGAGGAAGTGGGAGGAGGGGGAGGGGGAGGAAGGGAGTAGTGCTGACGTGGATGGTTCAGGGCTGAATTATGAGTCTGATGAGAATGATAATGGAAATAATGGTTTGAAGGGGAGTGAGAATGGTGGAGATCACAAGGGGAAGAGAAAGGGGTTGCCTGCTAAAAATCTCATGGCGGAGAGGCGCCGCAGGAAGAAGCTCAATGATCGGTTGTACATGCTCAGGTCTGTTGTGCCCAAGATTAGCAAGATGGATAGGGCTTCAATACTGGGGGATGCAATTGACTACCTGAAGGAGTTGCTGCAGCGGATTAATGATCTCCATAACGAACTGGAAATGACTTCGGCGGGCTCGTCGCTGCCACCATCTACTTCTACAAGCTTTCAGCCTCTAACACCCACCCTGCCAACCCTTCCCTGCAGGGTCAAGGAGGAACTGTATCCTGGCGCCTTGCCAAGCCCTAAAAATCAAGCTGCAAAGGTTGAAGTGAGAGTAAGAGAAGGGAGAGCTGTCAACATTCACATGTTTTGCACCCGCCGACCAGGCCTTTTGCTTTCTACCATGAGGGCTTTGGACAACCTTGGATTGGATGTACAGCAGGCTGTTATAAGCTGTTTCAACGGCTTTGCTTTAGATGTGTTTAAGGCTGAGTGCAGAGAAGGCCAGGATGTGCTTCCTGAGCAAATTAAAGCAGTGCTCTTGGATTCAGCAGGCTTTCATGGTATGATGTGA 1281 0.5168 MMEGYTLPAPPTEEDAPPPSWGRPNSQEEDIAIALGAPLTFKSMLQQQPQPQQPQLDSFFNFNINSATSIPFVPSMESFPPLDPFSPSLPPPPFFNTNTNTLPFDPGFDMGLETGLHSSCPPLFSQLQQGFKFGELEALTAPGNVPFLDGAKGDNPLERVQPTLYRKRRGTAEIPGLETVRRKGRKWEEGEGEEGSSADVDGSGLNYESDENDNGNNGLKGSENGGDHKGKRKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELEMTSAGSSLPPSTSTSFQPLTPTLPTLPCRVKEELYPGALPSPKNQAAKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFKAECREGQDVLPEQIKAVLLDSAGFHGMM* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0885 426 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 154 426 - -
Pvu1g0885 426 PANTHER BHLH TRANSCRIPTIONAL FACTOR 154 426 - -
Pvu1g0885 426 SMART finulus 240 289 IPR011598 GO:0046983
Pvu1g0885 426 MobiDBLite consensus disorder prediction 207 221 - -
Pvu1g0885 426 Gene3D - 228 299 IPR036638 GO:0046983
Pvu1g0885 426 Coils Coil 280 300 - -
Pvu1g0885 426 Pfam Helix-loop-helix DNA-binding domain 241 283 IPR011598 GO:0046983
Pvu1g0885 426 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 234 283 IPR011598 GO:0046983
Pvu1g0885 426 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 237 308 IPR036638 GO:0046983
Pvu1g0885 426 CDD ACT_UUR-ACR-like 356 415 - -
Pvu1g0885 426 MobiDBLite consensus disorder prediction 168 193 - -
Pvu1g0885 426 MobiDBLite consensus disorder prediction 224 245 - -
Pvu1g0885 426 MobiDBLite consensus disorder prediction 168 245 - -
Pvu1g0885 426 CDD bHLH_AtAMS_like 237 295 - -
Pvu1g0885 426 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0885 Pvu-Chr1 15261013 15264731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0885 135 401 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 65.343 2.12e-101 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu1g0885 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0885 - - gmx:100804797 528.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0885 1 15261013 15264731 Pvu1g0885 1 15261013 15264731 ECH
Pvu1g0885 1 15261013 15264731 Pvu4g0754 4 10599717 10601311 PCT