LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu1g0876	ATGTCCATCTTGCCCTCACAAACCCAAACGTCATCTTCCTCCTCTTCCTCTGCGTCATCTCCTAACCCTAATCCCCAACATGGCATCGGAATCCCTCTTCCTCAACAACCCTTCCCTTATCTCTCACCCCCACTCCACCACGCTCTCGGATCTCTCCAGATCTCCGATATCCCAGGTTCATCGACTCAAGCTGCTGAAGATTCTGGTGGATCTTCCGAAAAGGTGACAGAATTAGGGTCTCCAAGTGGAGTGATGGTTTCACCTCAGCAAAACTCTAGAACACGTTCTAGGATTCCCGGAGGAAGACGGGCAGGAATGGCTTCTCATAGAAACCAACAAGCTCCTGGGTCCGTGAGTTCTCATGGAAGTTCCCCTTTGGCAGGGAGAAAAGCTCAGACTGTGAACGGAAATTACTTGCTGAATTTTCAATATGACCCAATATCCCGTTCTCAACCACGGGGTCCCCCTCCTCCCCCTGCAGCAAGAAGGAATTGGAAGAGGAAGCCATACAATAAAGATTTGTTTTTGCAGGCAAATTACAAGTTCATGGTGTTAGATTCAGGAAATTATTCTCCTGAGTTGATGGATCCTGATAAAATGTTGCAGTGGGAAGATATTATATGTGTGACATATTTGACCCCCTTTTCAGTTCAGTGTCCAATTTGTTTGGAGTATCCACTGTGTCCGCAGATAACCTCATGTGGACATATTTTCTGTTTCCCATGTATTCTACAGTACTTAATGATGGGAGAAGAGGATCACAAAGGCGATATCTGGAAAAGGTGTCCTTTGTGCTTTGTGATGACATCTGCCAAGGATTTATATACAGTGCACATCACAAATGTTAAACAATATCAAGTTGGAGATAATGCTGAGTTCACCTTTTTAACTCGGAAAAAGGATTCATTTATTCCGTCAAATAAACAAGAGACAAATATAACATCATGTGGTAATGGACATTTCTGTGATCCCTTTTCTAAGTTTACTCTTACATCAGATGTAGATCTCTCAGTGAGGCATTCAATATCAGATCTAGATGGTTGGCTGGCCAGAGCAGATTCTGGTCTTGTTGATGACCTGGAGAAGCTTCCTTATGTTTGTGCTGCAATGCAGCAACTGGAACAGAGGAAGAGGTATTGGAATGAGCAAAAGTGTAATGACAGCGAAGATTCTAAGCCTATTGATCATGGACATCAGATACCATCCATGGCAACAAATTCTATGGATGCTGATGATGAAAATTGTTCTAATGGGTCAAGAACTTCCTCTACTGATTACCATGACCAAATTAAGGTTACGATGATGGATAAGTCAACTGCTGGAGCCTCTTCAGACCAAACTTTGAATGTGGAGAACGAATTAATAGAGCAACAGATGAATTTATGTTCTTCATATGAGGAGAAGAAGAATAGTATTCAAAGGCCTGCAGAGGATGGTGATGTTGAAGAAGTGAAGGGAAATGATTCATACAGTTTCTACCAGGCTGCTGATGGTCAACATCTAATTCTTCATCCTCTAAACATGAAGTGTTTGCTCCACCATTATGGGAGCTATGATATGCTTCCACACAGAATAAATGGAAGGATTCTACAATTAGAGACAGTTACTCAGTCTGAGGCCATGAGGAGGCGATATCGATTCCTAAGTCATTTTCCGTTAACCACAACATTTCAGCTTTGTGAAGTTGATTTGAGTGAGTTGTTACCACCTGAAGCACTGACTCCATTTATGGATGAAATAAAGAAACGTGCAAATCAGAGGAAGCAACTTGCAAAAAAGGAACGGAAGGAAAAAATAAGGGCTGAAGCTACAGATACTTATTCCCTTCCTATATCATTAAGTAGTCGGTTTACATCTCATGATGATCCTCCAACATTCTCCATGGATGACTTTGAAGCTCTAGGAAATTCAACTGTATCCTCAAGTACTCCCGTAGCTGGGGAGAAAAAATCGTTCTCAAATGTCACAAGACTTGGGTTTGCTGCTGCTCATGATTCTCCATCCTTGCAAATTCAAGAAACTAGTGGTCTACACAATAACAATGCTACAACTGATTCCTCTGCCACAACAGGTTCGAGAAACGGGGAGACACAGTCATACTCCAATGTTATATCAAGAGCAGAATCAAACATAAGCTCGAATGCACCAAAGACTAATGAGTTGGGGAAGAAAGGTAAGAAGCCAAGTCGAGTTCTTCTGTCCACAGCTGGAGGTAGACGTTATTGA	2226	0.4218	MSILPSQTQTSSSSSSSASSPNPNPQHGIGIPLPQQPFPYLSPPLHHALGSLQISDIPGSSTQAAEDSGGSSEKVTELGSPSGVMVSPQQNSRTRSRIPGGRRAGMASHRNQQAPGSVSSHGSSPLAGRKAQTVNGNYLLNFQYDPISRSQPRGPPPPPAARRNWKRKPYNKDLFLQANYKFMVLDSGNYSPELMDPDKMLQWEDIICVTYLTPFSVQCPICLEYPLCPQITSCGHIFCFPCILQYLMMGEEDHKGDIWKRCPLCFVMTSAKDLYTVHITNVKQYQVGDNAEFTFLTRKKDSFIPSNKQETNITSCGNGHFCDPFSKFTLTSDVDLSVRHSISDLDGWLARADSGLVDDLEKLPYVCAAMQQLEQRKRYWNEQKCNDSEDSKPIDHGHQIPSMATNSMDADDENCSNGSRTSSTDYHDQIKVTMMDKSTAGASSDQTLNVENELIEQQMNLCSSYEEKKNSIQRPAEDGDVEEVKGNDSYSFYQAADGQHLILHPLNMKCLLHHYGSYDMLPHRINGRILQLETVTQSEAMRRRYRFLSHFPLTTTFQLCEVDLSELLPPEALTPFMDEIKKRANQRKQLAKKERKEKIRAEATDTYSLPISLSSRFTSHDDPPTFSMDDFEALGNSTVSSSTPVAGEKKSFSNVTRLGFAAAHDSPSLQIQETSGLHNNNATTDSSATTGSRNGETQSYSNVISRAESNISSNAPKTNELGKKGKKPSRVLLSTAGGRRY*	742

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu1g0876	741	CDD	RING-HC_RNF10	219	266	-	-
	Pvu1g0876	741	MobiDBLite	consensus disorder prediction	400	427	-	-
	Pvu1g0876	741	SUPERFAMILY	RING/U-box	218	269	-	-
	Pvu1g0876	741	MobiDBLite	consensus disorder prediction	673	719	-	-
	Pvu1g0876	741	MobiDBLite	consensus disorder prediction	673	741	-	-
	Pvu1g0876	741	SMART	ring_2	219	265	IPR001841	-
	Pvu1g0876	741	MobiDBLite	consensus disorder prediction	1	129	-	-
	Pvu1g0876	741	ProSiteProfiles	Zinc finger RING-type profile.	219	265	IPR001841	-
	Pvu1g0876	741	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	212	296	IPR013083	-
	Pvu1g0876	741	MobiDBLite	consensus disorder prediction	145	165	-	-
	Pvu1g0876	741	MobiDBLite	consensus disorder prediction	384	427	-	-
	Pvu1g0876	741	MobiDBLite	consensus disorder prediction	27	41	-	-
	Pvu1g0876	741	MobiDBLite	consensus disorder prediction	1	26	-	-
	Pvu1g0876	741	MobiDBLite	consensus disorder prediction	54	97	-	-
	Pvu1g0876	741	Pfam	Zinc finger, C3HC4 type (RING finger)	219	265	IPR018957	GO:0046872
	Pvu1g0876	741	MobiDBLite	consensus disorder prediction	110	129	-	-
	Pvu1g0876	741	Coils	Coil	577	601	-	-
	Pvu1g0876	741	ProSitePatterns	Zinc finger RING-type signature.	234	243	IPR017907	-
	Pvu1g0876	741	PANTHER	RING FINGER 10 FAMILY MEMBER	91	737	IPR039739	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu1g0876	64	692	C3H Transcription Factor Family	AT3G26730	51.355	0.0	615

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu1g0876	-		-	gmx:100798764	1175.61

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu1g0876	1	15175016	15184973	Pvu1g0876	1	15175016	15184973	ECH