Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0867 ATGATCAATGCTAAACTTCATGTTATGTTTAATTTGAATTACGAATGCTTCTTTGATATGGCATATTTAGCTGCAAGGTCCTCAGCAAGAGAGAGATCAATTTGCTGTGTTCATAGATATAAGACTATAGAAGAACCTTTCATAGAGTTGAACAAGGTGGATCCAAGGCATGGAAAGAGGCCTCTCCCTTCTGATCATGCATCAAGGGAGAACAGGGAAGGTTTCAACTTCCCTACCCAACAAGGGGAAGAACCTTCTTCATATCCCTTTCTACATCCAATCCATACTGCTCATGATAGCACTCCTTCTACACCAATTCCACAATATGGCCAAATAACCACTTCTACCTTGATTGAGACACCGGACCCATCTCAGCACCCTTTAAATCAAGGGAGAAAAAGACACTATAGAGGAGTTCGGCAGAGACCATGGGGGAAATGGGCTGCCGAAATCAGAGACCCTAAAAAGGCTGCTAGAGTGTGGCTTGGCACTTTTGACACGGCAGAGGCTGCAGCTGCTGCTTATGATGCTGCTGCTTTGAAGTTCAAAGGATCCAAAGCAAAACTCAATTTCCCAGAACACGTTCTTCTTGCTTCAATACCACCACCACCTTCACGTTCTACTCAAAACATTAACAGCAACAATAGTTATTATGCTTCTTCTTCACCTCTTGCACCAACACCTTCACCACCAGCTTATCAACCACAACCACAGGAAGAAGCTTTTCCAAATCTAATGCAGTACGCGCAGCTTCTTTGGAGTAGGGATGATGATGATCTACAACGTGTTGCTTCAGGCCTTCACCATCATAACCCCAATGAGTCTTTCTATGATTCCAGTTCTTCAACTTTGTTCTCATCCTCCTCCACTTCTGTGACTCAGTCTGATCAACAGATTGGAGATGACGCGAGTGGCTCCAAGGAGGAAGATTTTTATGGTTCTTGCTTTTTTAGAGGGAGTGATTTTCATGGCAAGAATTGA 981 0.4343 MINAKLHVMFNLNYECFFDMAYLAARSSARERSICCVHRYKTIEEPFIELNKVDPRHGKRPLPSDHASRENREGFNFPTQQGEEPSSYPFLHPIHTAHDSTPSTPIPQYGQITTSTLIETPDPSQHPLNQGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAAAYDAAALKFKGSKAKLNFPEHVLLASIPPPPSRSTQNINSNNSYYASSSPLAPTPSPPAYQPQPQEEAFPNLMQYAQLLWSRDDDDLQRVASGLHHHNPNESFYDSSSSTLFSSSSTSVTQSDQQIGDDASGSKEEDFYGSCFFRGSDFHGKN* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0867 326 MobiDBLite consensus disorder prediction 53 82 - -
Pvu1g0867 326 MobiDBLite consensus disorder prediction 118 140 - -
Pvu1g0867 326 MobiDBLite consensus disorder prediction 53 72 - -
Pvu1g0867 326 SUPERFAMILY DNA-binding domain 135 193 IPR016177 GO:0003677
Pvu1g0867 326 Gene3D AP2/ERF domain 134 194 IPR036955 GO:0003700|GO:0006355
Pvu1g0867 326 MobiDBLite consensus disorder prediction 287 301 - -
Pvu1g0867 326 MobiDBLite consensus disorder prediction 202 223 - -
Pvu1g0867 326 CDD AP2 135 194 IPR001471 GO:0003700|GO:0006355
Pvu1g0867 326 Pfam AP2 domain 135 184 IPR001471 GO:0003700|GO:0006355
Pvu1g0867 326 ProSiteProfiles AP2/ERF domain profile. 135 192 IPR001471 GO:0003700|GO:0006355
Pvu1g0867 326 SMART rav1_2 135 198 IPR001471 GO:0003700|GO:0006355
Pvu1g0867 326 MobiDBLite consensus disorder prediction 287 308 - -
Pvu1g0867 326 PRINTS Ethylene responsive element binding protein signature 136 147 IPR001471 GO:0003700|GO:0006355
Pvu1g0867 326 PRINTS Ethylene responsive element binding protein signature 158 174 IPR001471 GO:0003700|GO:0006355
Pvu1g0867 326 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR-LIKE PROTEIN ISOFORM 2 103 309 - -
Pvu1g0867 326 PANTHER DNA-BINDING DOMAIN 103 309 IPR044808 GO:0003700|GO:0009873
Pvu1g0867 326 MobiDBLite consensus disorder prediction 200 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0867 Pvu-Chr1 14986698 14988815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0867 132 248 AP2-EREBP Transcription Factor Family AT5G61890 59.829 7.22e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu1g0867 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0867 - - vun:114189743 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0867 1 14986698 14988815 Pvu9g1662 9 23312039 23314113 ECH
Pvu1g0867 1 14986698 14988815 Pvu1g0867 1 14986698 14988815 ECH
Pvu2g2891 2 44487105 44490185 Pvu1g0867 1 14986698 14988815 ECH
Pvu9g1662 9 23312039 23314113 Pvu1g0867 1 14986698 14988815 ECH
Pvu1g0867 1 14986698 14988815 Pvu4g0981 4 24438791 24441164 PCT
Pvu4g0750 4 10524334 10526517 Pvu1g0867 1 14986698 14988815 PCT