Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0860 ATGGATCTTCTTTTCCTTCTTCAGTGCCTTCTCTTCTTCACTTCGCATCACGCAAATGCCCTCAATGCTTCAATTTCTCGCGACGCATTGTCTCTTCTCTCTTTCAAAAGCTTCGTCTCTTCCGACCCTTCCAATTTCCTCGCCGGTTGGAACAACCGCACCTCCTCCAATCTCTGCCGATGGCACTCCGTCGCGTGCGGTGGCGCCGGGAGCCTCTCTGGCCGAGTCACTTCCCTCAGTGTCACCGGTCTCGGCGGCGGCCAGTTGTCGCCCTCCGTCGGTGACTTGTCCGAGCTCCGCGTTCTATCCCTCGCCGGAAACATGTTCTCCGGCGAGATTCCTTCTACCGTTGGGAATCTGCGGTTTCTCGAGGTCCTCGAGCTTCAAGGGAACAACTTTTCAGGGAGAGTCCCGACCCAGATGAGTTTTGCTTTTCTTCAGTCTCTTAAACTTATTAACATCTCTGGTAATGCCTTCTCTGGTTCGATTCCGAGTGAGATTATTGGCTCTGGGAGTGTGAAAATCGTTGATTTGTCGAATAATCAGTTTTCTGGTGTGATTCCTCTGAATGGTACTTGTGATTCGTTGAAGCATTTGAAGTTGTCTCGTAACTTTTTGACTGGGGAGATTCCACCCCAAATTGGAAAATGTAGAAACTTGAGGACTCTTTTGGTTGATGGGAACATCTTGGAAGGTAGAATACCTTCTGAGATTGGCCATATTGTTGAACTGAGAGTTCTGGATGTTTCTAGAAACTCCCTAACTGGAAGGGTCCCTAAGGAGTTGGCTAATTGTGGGAAACTGTCTGTGCTTGTGCTTACTGATTTGTTTGAAGATCGTGATGAGGGAGGATTGGAGGATGGCTTTAGAGGAGAGTTTAATGCATTTGTTGGGAACATACCTCCTCAAGTGTTTCTGCTTTCAAGTCTAAGGGTGTTGTGGGCTCCACGAGCGAATCTTGGTGGTCGGTTGCCTGGTGGTTGGTCGGATTCGTGCTCTCTGAGGGTACTCAATTTGGTGCAGAATTATGTTACCGGTGTCTTGCCTGAGAGTTTGGGGATGTGTAGGAATTTGAGTTTCTTGGACTTGAGTTCTAATAATTTGGTGGGATATCTGCCTTCATTGCAGCTTCATGTTCCTTGTATGGTGTACTTCAATGTCAGCAGAAATAATATATCTGGCACTCTTAAAGGATTTAGGAAAAAGAGCTGTGGTTTGAGTGCACTAGACCCTTCATTCCTAGAACTGGATGGTTTTAGTGATGATGCATACTTTAATTTTCCTGTTTGGAGGTTTCAAAAGAATGCTTTCATTGGATCTGGTTTTGAGGAGAATAACACTATTGTTGTTAGCCATGATTTCAGTTGGAATAGTTTTGTGGGCTCCTTGCCTTTGTTCTCTCTTGGAGATAGTCTTTTTAGTGCTAATCGTAAAGTCTCCTATGCACTGTCTCTCAATAATAATAGGTTCAATGGAATTCTACCGGACCAGTTAGTTTCAAACTGTAACGACCTCAAGACATTGTCAGTTAACTTGAGTGTGAACCAACTATCGGGTGGGAATTTCCAAAAGTCGGTTTTGGAGTGCCTAAAGTTGACAGATTTTGAAGCAGCATACAACCAGATTGATGGGTCAATTGGGCCAGGTATAGGTGACTTGGTGATGCTTCAACATCTTGATTTAAGTGGGAACAAGTTATCTGGATCACTCCCAAATCAGTTGGGAAACCTACAAAACATGAAATGGATGCATCTGGGAGGAAACAATCTAACGGGGGAAATTCCTTCCCAACTTGGCAAATTGACTTCCCTTGCTGTTTTGAACTTGTCTCACAATGCTCTGGTTGGAACAATTCCTGGGAGTTTGTCAAATGCCAAAAGTTTTGAAATTCTGTTGGTGGACCACAACAAACTTTCTGGGGAAATACCTTTAACTTTTTCTACTCTTTCCAATCTTATGCAGCTGGATGTTTCTTTTAACAATCTTTCTGGTCATATTCCTCGTCTTCAACACCCAAGTGACTGTGATTCTTATAAAGGAAATGCACACCTGCATCCTTGCCCTGATCCATATTCTGACTCACCTGCTTCTCTTCCAGTTCCCCTTGAAATCCAGCATCATACTCAAAGAGGGAGAAAATTAAGGACATTGGTTATTGTTGTGGTGACTTCTGCTTCTGTGGTGCTCTGCACGCTTCTGGGAATAGTATTTGTAATATTTTCTGGAAGGAGTAAATTTGGTCGGCTTAGCAGTATAAGAAGGCGACAGGTAGTGACCTTTGAAGATGTTCCAACTGAATTGAGTTATGACAGTGTGGCCACAGCTACTGGAAACTTCAGCATCCGACATCTAATTGGCACAGGCGGCTTTGGGTCAACGTACAAGGCAGAACTGTCCCCAGGTTTTCTTGTTGCCATAAAGAGGTTGTCCATAGGTAGGTTTCAAGGCATTCAACAGTTTGAAACGGAAATAAGGACACTAGGAAGAATTCGACACAAGAATCTTGTGACTCTTATTGGCTATTATGTAGGGAAGGCTGAAATGTTCTTAATTTACAACTATCTTTCTGGTGGGAACCTTGAAGCTTTCATACATGACAGTTCAGGGAAAAATGTTCAGTGGCCAGTTATTTACAAAATAGCAAAAGACATAGCAGAGGCCCTTGCCTTCCTTCACTACTCATGTGTTCCTCGGATTGTTCACCGGGATATCAAACCTAGCAACATTTTACTTGATGAAGATCATAATGCCTACCTGTCGGATTTTGGCTTGGCACGACTGCTTGAGGTAACTGAGACCCATGCCACCACTGATGTTGCAGGCACATTTGGTTACGTTGCACCAGAATATGCCACCACTTGCAGGGTTTCTGACAAAGCAGATGTCTACAGCTTTGGTGTAGTGTTATTAGAATTGATGTCTGGAAGAAAGTCACTTGATCCATCTTTTTCTGAGTATGGAAATGGATTCAACATTGTACCCTGGGCAGAGCTACTAATGACCGAAGGCCGTTGTTCTGAGCTATTTTCATCTACTTTGTGGGAAGCAGGGCCTAAGGAAAAACTCTTGGGGCTTTTAAAGCTTGCATTAACATGCACAGAAGAGACTCTTTCTATTCGACCATCAATGAAACTGGTTCTTGAGAAATTGAAATATTTGAAAAGTTGA 3168 0.4372 MDLLFLLQCLLFFTSHHANALNASISRDALSLLSFKSFVSSDPSNFLAGWNNRTSSNLCRWHSVACGGAGSLSGRVTSLSVTGLGGGQLSPSVGDLSELRVLSLAGNMFSGEIPSTVGNLRFLEVLELQGNNFSGRVPTQMSFAFLQSLKLINISGNAFSGSIPSEIIGSGSVKIVDLSNNQFSGVIPLNGTCDSLKHLKLSRNFLTGEIPPQIGKCRNLRTLLVDGNILEGRIPSEIGHIVELRVLDVSRNSLTGRVPKELANCGKLSVLVLTDLFEDRDEGGLEDGFRGEFNAFVGNIPPQVFLLSSLRVLWAPRANLGGRLPGGWSDSCSLRVLNLVQNYVTGVLPESLGMCRNLSFLDLSSNNLVGYLPSLQLHVPCMVYFNVSRNNISGTLKGFRKKSCGLSALDPSFLELDGFSDDAYFNFPVWRFQKNAFIGSGFEENNTIVVSHDFSWNSFVGSLPLFSLGDSLFSANRKVSYALSLNNNRFNGILPDQLVSNCNDLKTLSVNLSVNQLSGGNFQKSVLECLKLTDFEAAYNQIDGSIGPGIGDLVMLQHLDLSGNKLSGSLPNQLGNLQNMKWMHLGGNNLTGEIPSQLGKLTSLAVLNLSHNALVGTIPGSLSNAKSFEILLVDHNKLSGEIPLTFSTLSNLMQLDVSFNNLSGHIPRLQHPSDCDSYKGNAHLHPCPDPYSDSPASLPVPLEIQHHTQRGRKLRTLVIVVVTSASVVLCTLLGIVFVIFSGRSKFGRLSSIRRRQVVTFEDVPTELSYDSVATATGNFSIRHLIGTGGFGSTYKAELSPGFLVAIKRLSIGRFQGIQQFETEIRTLGRIRHKNLVTLIGYYVGKAEMFLIYNYLSGGNLEAFIHDSSGKNVQWPVIYKIAKDIAEALAFLHYSCVPRIVHRDIKPSNILLDEDHNAYLSDFGLARLLEVTETHATTDVAGTFGYVAPEYATTCRVSDKADVYSFGVVLLELMSGRKSLDPSFSEYGNGFNIVPWAELLMTEGRCSELFSSTLWEAGPKEKLLGLLKLALTCTEETLSIRPSMKLVLEKLKYLKS* 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0860 1055 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Pvu1g0860 1055 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 5 1054 - -
Pvu1g0860 1055 SUPERFAMILY Protein kinase-like (PK-like) 757 1050 IPR011009 -
Pvu1g0860 1055 ProSitePatterns Serine/Threonine protein kinases active-site signature. 899 911 IPR008271 GO:0004672|GO:0006468
Pvu1g0860 1055 SUPERFAMILY RNI-like 79 411 - -
Pvu1g0860 1055 ProSitePatterns Protein kinases ATP-binding region signature. 785 807 IPR017441 GO:0005524
Pvu1g0860 1055 SUPERFAMILY L domain-like 476 668 - -
Pvu1g0860 1055 SMART LRR_typ_2 649 671 IPR003591 -
Pvu1g0860 1055 SMART LRR_typ_2 96 120 IPR003591 -
Pvu1g0860 1055 SMART LRR_typ_2 601 625 IPR003591 -
Pvu1g0860 1055 SMART LRR_typ_2 241 265 IPR003591 -
Pvu1g0860 1055 SMART LRR_typ_2 553 577 IPR003591 -
Pvu1g0860 1055 SMART LRR_typ_2 146 170 IPR003591 -
Pvu1g0860 1055 Pfam Leucine Rich Repeat 556 577 IPR001611 GO:0005515
Pvu1g0860 1055 Pfam Leucine Rich Repeat 195 217 IPR001611 GO:0005515
Pvu1g0860 1055 SMART serkin_6 779 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0860 1055 Gene3D Transferase(Phosphotransferase) domain 1 855 1054 - -
Pvu1g0860 1055 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 5 1054 - -
Pvu1g0860 1055 PRINTS Leucine-rich repeat signature 556 569 - -
Pvu1g0860 1055 PRINTS Leucine-rich repeat signature 601 614 - -
Pvu1g0860 1055 Gene3D Ribonuclease Inhibitor 22 85 IPR032675 -
Pvu1g0860 1055 ProSiteProfiles Protein kinase domain profile. 779 1053 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0860 1055 Pfam Protein kinase domain 781 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0860 1055 Gene3D Ribonuclease Inhibitor 290 476 IPR032675 -
Pvu1g0860 1055 Gene3D Ribonuclease Inhibitor 481 694 IPR032675 -
Pvu1g0860 1055 Gene3D Ribonuclease Inhibitor 86 276 IPR032675 -
Pvu1g0860 1055 Gene3D Phosphorylase Kinase; domain 1 741 854 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0860 Pvu-Chr1 14824969 14828350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0860 2 1054 Receptor kinase-like Gene Family AT3G02130 42.745 0.0 785
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Pvu1g0860 Pkinase 6.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0860 - - gmx:100795047 1744.55