Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0856 ATGGTGAGGGGAGGAGGAGGAGGAGGAGGGGAGATAGTGGAAGTTGAAGGGGGACACATTGTGAGGTCCACGGGGCGGAAGGACCGTCACAGCAAAGTGTGCACCGCCAAAGGACCGCGTGACCGGCGGGTGAGGCTGTCGGCCCACACCGCAATTCAATTCTACGACGTGCAGGATCGGTTGGGCTACGACCGGCCCAGTAAGGCTGTGGACTGGCTCATCAACAAGGCCAAGGCCGCCATCGATCAACTCGCGCATCTCCCTCCCTGGAAACCAACCCTCCCAACAACAAACTACCTAAACGACGACGAATCAGACAAAACAAACCCTAATAACCCAAACTCAACCGCAAACGCCAACACAAACCCTGATGCTGAAATTCTCAACCAGTTCAACGAGAACCTTGAGAACGATGGTGGTGGTGGAGGAGGAGCAGGAGGAGGAGGAGGAGGAGGAGGCTCGAGTTATCTTCCGTTGGATAACGACACGATAAGATCGTTCTTCCCCATTACGACGTCGTCGTTGATTCAGTTCCAGAGCTACCCACCGGATTTGCTTTCGAGGACGAGCAGCCAGGATTTGCGTCTCTCGCTTCAGTCCTTGCAGGACCCGATTATGCTCCACCATAACCAAAACGAGCCCGTGCTTTTCGCTGGAGCCGGGTTTGATAACATGGTAGCGTGGAACAACAGTGGTAATGCTAATAATGATACTCATGGTGGTGGAGGTGGAGGAGGGTTTGTGCTTAACGCTCCCTCGCCTTTGCCGGGGCCGGCGACGGTGGCGTCGCCGGCGGTGGTTTTTGGCTATGGTAATGGTAATGGTCAAGGCCAGTATTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACCCCGTCCGTTCGTGCGTGGATTGACGCGCCGTCGTTCGTGGCCGCCGCCGATCATTATCATCGGCATCACTATCTGTCGCCTGCGGCGGCCGCTGCGGCGTTGGTGTATCAATCATCTCCTTCTTCGGCATTTGCGCCCGGGGGCTTCTCGGGATTCCGCGTGCCGGCACGAATTCAGGGTGAGGAGGAGCACGACGGCGTGTCCGATAAGCCGTCCTCTGCTTCCTCCGATTCTCGCCGCTGA 1116 0.569 MVRGGGGGGGEIVEVEGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKAAIDQLAHLPPWKPTLPTTNYLNDDESDKTNPNNPNSTANANTNPDAEILNQFNENLENDGGGGGGAGGGGGGGGSSYLPLDNDTIRSFFPITTSSLIQFQSYPPDLLSRTSSQDLRLSLQSLQDPIMLHHNQNEPVLFAGAGFDNMVAWNNSGNANNDTHGGGGGGGFVLNAPSPLPGPATVASPAVVFGYGNGNGQGQYFSQRGPLQSSNTPSVRAWIDAPSFVAAADHYHRHHYLSPAAAAAALVYQSSPSSAFAPGGFSGFRVPARIQGEEEHDGVSDKPSSASSDSRR* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0856 371 MobiDBLite consensus disorder prediction 1 40 - -
Pvu1g0856 371 MobiDBLite consensus disorder prediction 346 371 - -
Pvu1g0856 371 MobiDBLite consensus disorder prediction 94 136 - -
Pvu1g0856 371 MobiDBLite consensus disorder prediction 348 371 - -
Pvu1g0856 371 Pfam TCP family transcription factor 25 109 IPR017887 -
Pvu1g0856 371 PANTHER TRANSCRIPTION FACTOR TCP4 8 212 - -
Pvu1g0856 371 PANTHER TRANSCRIPTION FACTOR TCP4 221 370 - -
Pvu1g0856 371 MobiDBLite consensus disorder prediction 88 156 - -
Pvu1g0856 371 ProSiteProfiles TCP domain profile. 26 84 IPR017887 -
Pvu1g0856 371 MobiDBLite consensus disorder prediction 20 40 - -
Pvu1g0856 371 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 8 212 IPR005333 GO:0003700
Pvu1g0856 371 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 221 370 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0856 Pvu-Chr1 14522916 14525242 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0856 7 370 TCP Transcription Factor Family AT3G15030 47.059 9.06e-84 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pvu1g0856 TCP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0856 - - gmx:100802063 471.855