LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu1g0828	CATATTTACAAGGAACCGGGGTCATCAGCAACTGAGCTAGTGGTAGTTGCAGTGGCTCATGCCTTTGCTCTATTTGCTGCTATTTCTATCAGTGCTCATGTTTCTGGTGGACACGTGAACCCTGCTGTCACTTTTGGTGCTCTTCTTGGTGGAAGGATCTCTGTCCTTAAAGCCCTCTACTATTGGATTGCTCAAATCCTTGGTTCTATTGTTGCTGCTCTCTTGTTGAGGCTTGTCACTAACAACATGAGACCAGAGGGGTTCGGTTTATCAAGTGGGGTTGGAGCTGTTCATGGTCTTATACTTGAAATTAGCCTTACATTTGGTCTGATGTACACTGTCTATGCCACTGCTATTGATCCTAAAAGGGGTGCAATTAGCACAATTGCACCTTTAGCCATTGCACTGGTGGTAGGGGCAAACATCCTGGCTGGTGGGCCTTTTGATGGGGCATGCATGAATCCTGCTCGGGCTTTCGGGCCTGCATTGGTGGGCTGGAGGTGGCAGTACCACTGGATCTTCTGGGTGGGCCCATTACTTGGGGCAGCCTTAGCAGCAGTCCTGTATGAATTTGTTTTGGTCCCAATTGAGCCTCCTCATCACCAACCTTTGCCTGCTGAAGATTACTAG	630	0.4857	HIYKEPGSSATELVVVAVAHAFALFAAISISAHVSGGHVNPAVTFGALLGGRISVLKALYYWIAQILGSIVAALLLRLVTNNMRPEGFGLSSGVGAVHGLILEISLTFGLMYTVYATAIDPKRGAISTIAPLAIALVVGANILAGGPFDGACMNPARAFGPALVGWRWQYHWIFWVGPLLGAALAAVLYEFVLVPIEPPHHQPLPAEDY*	210

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu1g0828	209	Gene3D	Glycerol uptake facilitator protein.	2	198	IPR023271	-
	Pvu1g0828	209	Pfam	Major intrinsic protein	11	189	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pvu1g0828	209	PRINTS	Major intrinsic protein family signature	20	44	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pvu1g0828	209	PRINTS	Major intrinsic protein family signature	57	76	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pvu1g0828	209	PRINTS	Major intrinsic protein family signature	102	120	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pvu1g0828	209	PRINTS	Major intrinsic protein family signature	135	157	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pvu1g0828	209	PRINTS	Major intrinsic protein family signature	172	192	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pvu1g0828	209	PANTHER	MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER	2	209	-	-
	Pvu1g0828	209	PANTHER	AQUAPORIN-8	2	209	IPR034294	-
	Pvu1g0828	209	ProSitePatterns	MIP family signature.	38	46	IPR022357	-
	Pvu1g0828	209	CDD	MIP	24	192	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Pvu1g0828	209	SUPERFAMILY	Aquaporin-like	5	200	IPR023271	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu1g0828	Pvu-Chr1	13101267	13102484	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu1g0828	13	209	Major Intrinsic Protein MIP	AT1G73190	69.458	5.48e-92	268

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu1g0828	K09873		-	gmx:100797632	347.436

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pvu1g0828	1	13101267	13102484	Pvu1g0828	1	13101267	13102484	ECH