Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0816 ATGGTTCTTCAAAATGATATTGATTTGCTAAATCCTCCTGCTGAGATTGAGAAGAGGAAACACAAACTCAAGCGTCTTGTTCAGTCCCCAAACTCTTTCTTCATGGATGTTAAGTGCCAGGGTTGCTTTAACATAACGACTGTGTTTAGCCACTCTCAGACTGTTGTTGTATGTGGAAACTGCCAGACTGTCTTGTGCCAGCCAACCGGGGGACGGGCAAGGCTAACTGAGGGATGCTCCTTTAGGAAGAAGGGAGACTAA 261 0.4559 MVLQNDIDLLNPPAEIEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0816 86 Pfam Ribosomal protein S27 30 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Pvu1g0816 86 Gene3D - 5 85 IPR023407 -
Pvu1g0816 86 PANTHER 40S RIBOSOMAL PROTEIN S27-RELATED 2 85 - -
Pvu1g0816 86 ProSitePatterns Ribosomal protein S27e signature. 38 70 IPR000592 GO:0003735|GO:0005840|GO:0006412
Pvu1g0816 86 Hamap 30S ribosomal protein S27e [rps27e]. 24 84 IPR000592 GO:0003735|GO:0005840|GO:0006412
Pvu1g0816 86 SUPERFAMILY Zn-binding ribosomal proteins 30 84 IPR011332 GO:0006412
Pvu1g0816 86 PANTHER 40S RIBOSOMAL PROTEIN S27 2 85 IPR000592 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0816 Pvu-Chr1 11896473 11897805 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0816 1 86 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 94.186 1.66e-59 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0816 K02978 - gmx:100776354 182.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0816 1 11896473 11897805 Pvu1g0816 1 11896473 11897805 ECH
Pvu1g0816 1 11896473 11897805 Pvu4g0742 4 10356050 10357197 PCT