Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0786 ATGGAAAAAGAAGGCTGGAATAGCTGCTCTTGCTCTGCGCACACCCTGCTGTCAATAGTTGCTACAATCATTCTCCTATTTCAACCAGATTACTGCATCGCCAAGCGACACCCACCATGTCCTCCTTCCTCATGCGCCCAAATTCACAACATATCTTACCCCTTTCGCCTCAAAGGAGACCCAAGTCACTGCGGCGACAAAAGGTATGAATTAGATTGCGTTAACAACGCCACACTCTTAACCGTGTTCTCGGCAAAATTCCATGTACGAGATATCGACTACAAGCGATACAAAATCGTTGTTACTGACCCAGGTCAAGACGAGTACGCTAATTGCTCCTTCATCCCTCGCAATTTCTTAACGAATCGCAATTTCACGACAGCAATTGGCCCTGATGATTTCGGATCACAGCCGTTCACTTATGAGCCCTGGGAAATTATCAGAATAGGGTACTTCAACTGCGTGAATCCTGTGAGTGACGATCCACGATATGTTAAGGTGGACATGAGTCGATGTAGCAGCGGAGGGCACGTGTACGCTGTATTGGAACCAGACTTCTATGAGTTTAGTGTGAACGACATCGAGGTTGGGTGCTATCTGATGGTGGCTACGGTTTGGACACCGAAGCAGAATGTTACCTACCATAAGTGTGATGGGAAGGACACGTGCGATCTAAGGGAGATTACGTTTCTTGAGCGGATACCGAAGTTGAATAGTAGCTACGATGAGATCCGTGGCTTAATAAGTGAGGGAATTCAGTTGTCGTGGTTGCCTATTATTTGCGAGGATCGATGTGGAAGGGGGACCGACTGTAAGGTGATCAATGAATCCAAGGGAGAAGTTGAGTGTGAGAAGCATTACTGTCATTACGCCTACCACACCACCCATAAATGCGAACAATGGCAACAGATTTTGGGCTATATTCGAGCTTATCTGAGAGGCGTTATGTATGGATTAGGTAGCAGAATAACATTCAGCACGAAACAATTGGACAGGCCAGTTGGACTGCAATATTTTGATGGAGGAATATTCATAGGACGAAACGTTATATCAATATTTTTGGCTGCCAGATGTCTGTTTGGAGTTGTACTTATTCTTGTGTTATTGATCTACAAATGGCGACGAAGACATTTCTCAATATATGAAAATATTGAAAATTTCTTGCTAGATAGCCATCTAAATCCCATTAGGTATGAATATAGAGAAATAAAAAAAATGACTCGAGGTTTCAAAGTGAAATTGGGTCAAGGAGGCTTTGGTACAGTATATAAAGGAAAACTTCGAAGTGGATTAGATGTAGCAGTAAAGATGTTGAACAAATCCAATGATAATGGACAAGATTTCATGAATGAAGTAGCTACCATTGGAAGAATACATCATGTAAATGTGGTACATCTTTGGAATGCTTTTAATGGAAATGGCAAGCAGGAGGAGGAACTCAAATCCTCAAGTAGAGCATTCAAGTCAACATTACTTTCCTTTTTGGATTTATGA 1494 0.4237 MEKEGWNSCSCSAHTLLSIVATIILLFQPDYCIAKRHPPCPPSSCAQIHNISYPFRLKGDPSHCGDKRYELDCVNNATLLTVFSAKFHVRDIDYKRYKIVVTDPGQDEYANCSFIPRNFLTNRNFTTAIGPDDFGSQPFTYEPWEIIRIGYFNCVNPVSDDPRYVKVDMSRCSSGGHVYAVLEPDFYEFSVNDIEVGCYLMVATVWTPKQNVTYHKCDGKDTCDLREITFLERIPKLNSSYDEIRGLISEGIQLSWLPIICEDRCGRGTDCKVINESKGEVECEKHYCHYAYHTTHKCEQWQQILGYIRAYLRGVMYGLGSRITFSTKQLDRPVGLQYFDGGIFIGRNVISIFLAARCLFGVVLILVLLIYKWRRRHFSIYENIENFLLDSHLNPIRYEYREIKKMTRGFKVKLGQGGFGTVYKGKLRSGLDVAVKMLNKSNDNGQDFMNEVATIGRIHHVNVVHLWNAFNGNGKQEEELKSSSRAFKSTLLSFLDL* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0786 497 Pfam Wall-associated receptor kinase galacturonan-binding 40 103 IPR025287 GO:0030247
Pvu1g0786 497 Pfam Protein tyrosine and serine/threonine kinase 411 471 IPR001245 GO:0004672|GO:0006468
Pvu1g0786 497 ProSitePatterns Protein kinases ATP-binding region signature. 414 436 IPR017441 GO:0005524
Pvu1g0786 497 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 213 466 - -
Pvu1g0786 497 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 9 216 - -
Pvu1g0786 497 SUPERFAMILY Protein kinase-like (PK-like) 394 475 IPR011009 -
Pvu1g0786 497 ProSiteProfiles Protein kinase domain profile. 408 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0786 497 Gene3D Phosphorylase Kinase; domain 1 386 477 - -
Pvu1g0786 497 PANTHER RUST RESISTANCE KINASE LR10-RELATED 9 216 IPR045874 GO:0004672
Pvu1g0786 497 PANTHER RUST RESISTANCE KINASE LR10-RELATED 213 466 IPR045874 GO:0004672
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0786 Pvu-Chr1 10898239 10903869 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0786 18 466 Receptor kinase-like Gene Family AT5G38260 24.348 3.22e-21 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pvu1g0786 PK_Tyr_Ser-Thr 9.1e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0786 - - pvu:PHAVU_001G076300g 1031.55