Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0784 ATGGAAAATGAAGGCTGGAATAGGTGTTCTTGCTCTGCACGCACTCTGGTGTCAATAATGGCTACAATTATTCTTCTATTCCAACCAGATTACTGTATCGCTAAGCGGCAACCACCGTGTCCTCCTTCATCATGTGGCCAAATTCGCAACATATCATACCCATTTCGCCTAAAAGGCGACCCAAACCGATGCGGCGACCCAAGGTATGAGTTAGACTGCGTTAACAACGCCACTCTCTTAACCTTGTTCTCGGCAAAATACCATGTACGAGATATCGACTACGAGCGATACAAAGTCGTTGTGAGTGACCCGGGTCGAGAGGAGGAGGGGGCTAATTGCTCCTTCATCCCTCGCAATTTCTTAACGGACAGTAATTTCAGGCCCACGGGCCTGGTTGGCCCGGACGATTTCGGATCGCAGCCGTTCACTTGGGAACCCTGGGATACTTTCAGAATAGGGTACTTCAACTGCGTGAATCCTGTGAGTGACGATCCACGGTATGTTGAGGTGGGCAGAGGTGAATGTGGCAGCGGAGGGCACGTGTACGCTGTTTTGGAGCCATCGCTGTATGAGTGGCGGGTAAAGGACATAAAGGTTGGGTGCGTTCTAATGGTGGCTACAGTGGTTGATTGGACACCGAAGGAGAATGTTAGTTACGATGAGATCCGTGGCGTGATAAGTGAGGGAATTCGGTTGTCGTGGTTGCCTGTTATTTGCGAGGATCGATGTGGAAGGGGAACCGATTGTAAGGTGATAAATGAATCCAAGGGAGAAGTTGAGTGTGAGAAGCATTACTGCCATTACGCCTACCAAACTACCGATAAATGCGAACCTTGGCAACAGATTTTTGGCTATATTCGAGCTTATCTTAGAGGCGTTATTTTTGGAATAGGTAGCAGAATAACATTCAGCACGAAACAATTGGACAACGCAGTTGGACTGCAATTTTTTGATGGAGGAATATTCATAGGACGAAATATTATACCAATATTTTTGGTTGCCAGATATCTGTTTGGAGTTGTACTTATTCTTCTGCTATTCATCTACAAATGGAGACGAAGACATTTTTCAATATATGAAAATATTGAAAATTTCTTGCTAGATAGCCATCTAAATCCCATTAGGTACGAATACAAAGAAATTAAAAAAATGACTGGAGGTTTTAGAGTGAAATTGGGTCAAGGAGGCTTTGGTGTTGTATATAAAGGAAAACTCCGAAGTGGGTTGGATGTAGCAGTAAAGATGTTGACCAAATCCAATGATAATGGACAAGATTTCATGAATGAAGTAGCTACCATTGGAAGAATACATCATGTAAATGTGGTGCGTCTTATTGGATATTGTGTTGATGGAAAAAAGCGTGCTTTGGTTTATGAATTTATGTCAAATGGATCATTAGATAAATACATTTTCTCCAAAGAAGAAAGTACCCCTTTAAGCTATGAGAAAATATATGAAATATCTATTGGAATAGCAGGTGGGATTGCATATTTACATCAAGGTTGTGATATGCAAATTCTGCATTTTGATATCAAGCCTCATAATATTCTTTTAGATGATAATTTTGTTCCGAAGGTTTCAGACTTTGGACTTGCAAAGCTACATGCTACAATTGATGGCGTTGTCAATATCACTGCACCAAGAGGAACATTGGGTTATATGGCTCCAGAGTTGTTTTACAAAAATATGGGTGGGGTATCTTATAAAGCTGATGTATATAGTTTTGGAATGCTTTTAATGGAAATGGCAAGTAAGAGGAGGAACTCAAATCCTCAAGCAGAGAACTCAAGTCAACATTACTTTCCCTTTTGGATTTATGATCAATTTCAAGAAGATAAAAATATTGACATAAGAGATGCTTCAGAAGATGACAATATTCTAGTGCAAAAGATGTTCTTGGTAGCACTTTGGTGTATTCAATTAAATCCAAGTGATCGTCCTTCAATGAATAAGGTGATAGAGATGCTTGAAGGGATGATTGAAAGCATTGAATTGCCTCCAAGGCCTTCATTTTATAAAAATGAAACATATAGACGTGATGATACTAATCCTGGCTTCACTGAGTCCATTTACTCTGATAGTCAGCCTGATGAAAGAGTGTAA 2103 0.4056 MENEGWNRCSCSARTLVSIMATIILLFQPDYCIAKRQPPCPPSSCGQIRNISYPFRLKGDPNRCGDPRYELDCVNNATLLTLFSAKYHVRDIDYERYKVVVSDPGREEEGANCSFIPRNFLTDSNFRPTGLVGPDDFGSQPFTWEPWDTFRIGYFNCVNPVSDDPRYVEVGRGECGSGGHVYAVLEPSLYEWRVKDIKVGCVLMVATVVDWTPKENVSYDEIRGVISEGIRLSWLPVICEDRCGRGTDCKVINESKGEVECEKHYCHYAYQTTDKCEPWQQIFGYIRAYLRGVIFGIGSRITFSTKQLDNAVGLQFFDGGIFIGRNIIPIFLVARYLFGVVLILLLFIYKWRRRHFSIYENIENFLLDSHLNPIRYEYKEIKKMTGGFRVKLGQGGFGVVYKGKLRSGLDVAVKMLTKSNDNGQDFMNEVATIGRIHHVNVVRLIGYCVDGKKRALVYEFMSNGSLDKYIFSKEESTPLSYEKIYEISIGIAGGIAYLHQGCDMQILHFDIKPHNILLDDNFVPKVSDFGLAKLHATIDGVVNITAPRGTLGYMAPELFYKNMGGVSYKADVYSFGMLLMEMASKRRNSNPQAENSSQHYFPFWIYDQFQEDKNIDIRDASEDDNILVQKMFLVALWCIQLNPSDRPSMNKVIEMLEGMIESIELPPRPSFYKNETYRRDDTNPGFTESIYSDSQPDERV* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0784 700 CDD STKc_IRAK 392 659 - -
Pvu1g0784 700 Gene3D Transferase(Phosphotransferase) domain 1 461 666 - -
Pvu1g0784 700 ProSitePatterns Protein kinases ATP-binding region signature. 392 414 IPR017441 GO:0005524
Pvu1g0784 700 Gene3D Phosphorylase Kinase; domain 1 364 460 - -
Pvu1g0784 700 Pfam Protein tyrosine and serine/threonine kinase 390 656 IPR001245 GO:0004672|GO:0006468
Pvu1g0784 700 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 14 685 - -
Pvu1g0784 700 ProSiteProfiles Protein kinase domain profile. 386 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0784 700 Pfam Wall-associated receptor kinase galacturonan-binding 40 103 IPR025287 GO:0030247
Pvu1g0784 700 SMART serkin_6 386 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0784 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 506 518 IPR008271 GO:0004672|GO:0006468
Pvu1g0784 700 PANTHER RUST RESISTANCE KINASE LR10-RELATED 14 685 IPR045874 GO:0004672
Pvu1g0784 700 SUPERFAMILY Protein kinase-like (PK-like) 371 657 IPR011009 -
Pvu1g0784 700 MobiDBLite consensus disorder prediction 671 700 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0784 Pvu-Chr1 10828810 10833303 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0784 18 672 Receptor kinase-like Gene Family AT5G38260 35.067 5.71e-108 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pvu1g0784 PK_Tyr_Ser-Thr 3.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0784 - - gmx:100820366 1096.65