Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0778 ATGGGCGAGTCGAGTATGCTACCCCTCCAAGGTGATTCCATATTGATAACACTATTGCTGATACTCATGCTTGCAGTAAGTAGCAGCGGTCAAAACGAGTGCTCGGAATTGTCTTGTGGGTCTGAAGAACCGCTTATTAGATTTCCCTTCCAACTCCTCCAGGGGATGAAAGATGCATGTGATTCTCCCGGTTTATGTGTCTATTGTAGTGAAAATAAAGAGACCATGCTTGTGCACCCTACAGTAAAACTCCGTGTCACAAACATAGACTACCGATCTCAGCTTACTTACTTGGAAGATCCAGAAAATTGCCTTCCGAAGAAGTTTCTAAACCTCTACAATTTTACTATTCCTCCTTACGAACTTTATTCATCACATGGACTTGTAAGATACAACAACTTGAACTTCTTCGATTGTTCTTTACTTGGGCTTACACACCTGAGAAACAGCGACCAGTTAAACTCGGGTTCACAAGATATGATTTATTGTCCGACTTATGTATCTAACTCTGACGAAAGTATCCTCGAATTGGACCTAACATCTTGTACCAAGATGTTCAACATCATTTCGCAGGCCTCGGCCTCTGACCTGCGGACGAATCGGTTGAATTTGAGATGGTCCAAACCAAGTTGTAGTGAGTGCGAAGCAAAAGGCAATAGATGTAAATGGAAGAAGAACAGCAAAACGGACATCGAATGTGTAGACTGCAGTGCGAAACCAAGAAAAATTCACATTCCCAGATCTGTTCTTTTCACTGCTGCAGGTTCTGTTTTTCTGGGGCTGGCGGTTATTGCCGTCTTTAAGATAGACCGCCATTTTAGAAAGAAAGAAGAAGACCAAGCTAGAGTGGATAAGTTTCTAGAGGATTACAGGGCAGATAAGCCTGCAAGATTTACCTATGCTGATATTAAAAGAATCACAGGTGGTTTTAAAGAGAAGTTGGGGGAAGGAGCTCATGGAGCTGTATTTAGAGGAAAGCTTTCGAATGAGATTCTGGTGGCTGTGAAGATCCTCAATAATACAGAGGGAGATGGGAAAGATTTCATCAATGAAGTTGGAATTATGGGAAAAATCCACCACATCAACGTGGTTCGTTTGCTTGGCTTCTGTGCAGAAGGACTCCATCGTGCTCTTGTCTACAATTTATTTCCAAACGGTTCGCTACAAAGCTTCATATTTCCACCGGACGACAAGGACCATTTTCTTGGCTGGGAGAAGCTTCAACACATTGCTCTTGGCATAGCTAAAGGGATTGAGTATCTTCATCAAGGTTGTGATCGTCCCATTATTCACTTTGACATCAACCCTCACAATGTGTTACTCGATGACAACTTCACTCCGAAAATTTCTGACTTTGGCTTAGCCAAATTGTGTTCAAGGAATCCTAGTTTGGTGTCCATGACAGCTGCAAGGGGAACCTTGGGATACATTGCACCAGAAGTTTTTTCTAGAAACTTTGGAAATGTGTCTTATAAATCTGATATCTACAGTTATGGAATGTTGTTGTTGGAAATGGTTGGAGGAAGGAAGAATGTAGACATATCTTCAGCACAAGATTTCCATGTTCTCTACCCAGATTGGATCCATAACCTGGTTGATGGAGATATCCATGTCCATGTTGAGGATGAAGATGAAGTTAAAATTGCAAAGAAACTAGCAATTGTTGGACTTTGGTGTATTCAGTGGCAGCCAGTGAACAGACCATCCATAAAATCTGTCTTACAAATGTTAGAAACTGCAGAGGAAAACCAGTTAACTGTTCCTCCTAACCCATTTCACTCAACGACTTCCACTGCTACTGGCAGACTCACTTCAACAAGACCTCCTATGGCGTTGGAAGCGATTCAAGAATAA 1854 0.4191 MGESSMLPLQGDSILITLLLILMLAVSSSGQNECSELSCGSEEPLIRFPFQLLQGMKDACDSPGLCVYCSENKETMLVHPTVKLRVTNIDYRSQLTYLEDPENCLPKKFLNLYNFTIPPYELYSSHGLVRYNNLNFFDCSLLGLTHLRNSDQLNSGSQDMIYCPTYVSNSDESILELDLTSCTKMFNIISQASASDLRTNRLNLRWSKPSCSECEAKGNRCKWKKNSKTDIECVDCSAKPRKIHIPRSVLFTAAGSVFLGLAVIAVFKIDRHFRKKEEDQARVDKFLEDYRADKPARFTYADIKRITGGFKEKLGEGAHGAVFRGKLSNEILVAVKILNNTEGDGKDFINEVGIMGKIHHINVVRLLGFCAEGLHRALVYNLFPNGSLQSFIFPPDDKDHFLGWEKLQHIALGIAKGIEYLHQGCDRPIIHFDINPHNVLLDDNFTPKISDFGLAKLCSRNPSLVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNVDISSAQDFHVLYPDWIHNLVDGDIHVHVEDEDEVKIAKKLAIVGLWCIQWQPVNRPSIKSVLQMLETAEENQLTVPPNPFHSTTSTATGRLTSTRPPMALEAIQE* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0778 617 Pfam Protein kinase domain 311 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0778 617 PANTHER RECEPTOR-LIKE KINASE 21 617 - -
Pvu1g0778 617 Gene3D Phosphorylase Kinase; domain 1 281 382 - -
Pvu1g0778 617 MobiDBLite consensus disorder prediction 585 617 - -
Pvu1g0778 617 MobiDBLite consensus disorder prediction 585 605 - -
Pvu1g0778 617 PANTHER RUST RESISTANCE KINASE LR10-RELATED 21 617 IPR045874 GO:0004672
Pvu1g0778 617 ProSiteProfiles Protein kinase domain profile. 308 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0778 617 SUPERFAMILY Protein kinase-like (PK-like) 292 579 IPR011009 -
Pvu1g0778 617 Pfam Wall-associated receptor kinase galacturonan-binding 34 96 IPR025287 GO:0030247
Pvu1g0778 617 ProSitePatterns Protein kinases ATP-binding region signature. 314 336 IPR017441 GO:0005524
Pvu1g0778 617 Gene3D Transferase(Phosphotransferase) domain 1 383 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0778 Pvu-Chr1 10559551 10561781 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0778 13 606 Receptor kinase-like Gene Family AT1G66910 34.206 2.72e-100 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pvu1g0778 Pkinase 2.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0778 - - gmx:100813645 905.59