Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0759 ATGCATTGGAGCATCATCACTGGTGGCATGATCTCAATTTTCAGGAACATGCCTTTCAAGAACCATGTACCAGTGTTCATCATGATGGGTCTTTCTTTCATTTCTAATGTTCAAGCACAATACAGTGAGACAGATACCATGCAAGATTTCCCTCAACCAGTTCGTCCAAGCAAGATGGTTGTAATAGTGGCCCTCTCAATATTGTTCACTATATCATTTATCTTACTTGTCTATATAAGGTTCTGCAGAACCACCCCTCTTGAGCTTATCAACAGAAGGAACCTTCATTCACCCAATTTTCAAGCACTAACTCAGTCAAGATCAAGGAGTTCAGGGATAGACAAAAAAGTGATTGAAGCACTCCCATTTTTCATGTTCTCTTCCCTTAAGGGGTCCAAACAAGGCCTGGATTGCACAGTTTGCTTGTCACAGTTTGAGGACACAGAGATTCTTAGACTCTTGCCAAAGTGCAAACATGCTTTCCACATGAATTGCATTGACAAGTGGTTTGAAAGTCACGCTACATGCCCTCTTTGCAGGAATAATATTGACCCCTTAGACATCAAGAACTTCAACTACTCAATCAGTTCAAGGTCCCTAAGAGTTCCTTCAAATTTAACCGAGGACACTAACCTTGAAATCTTTGTTCACAGGGAACCTTCGCATCAAGGGTCATCATCATCATCAAGGTTTAACATCGGAAGCAGGTTTTGGAATTTGAGCAGCAGCAGCAGAAAAAAGCTTCTCGTTGACCAAGAGGTTTCTGGTACAAATGGGACACACGTGCACAAGTTCTATCACAAAATTGTTGTCTCTGATGTTGTTAGAAGAAGCAGGTGGAGTGATCTCAACTCTTCGGACATGTTATCATTGAAGAGTGAGATGATTCATCACGTTTCAACAGGAAGATTCTCTCCCTCTAATGAATTTTTTTGCGGAAATTCGAGCCTTTCCTCTATTTTCAATGCGGATGAAAGTTCATTGACATTATTGAATACAGCTGAGAAGAGATCTATGTCTGATATTGCTCATGTTCCAAGGTTCATAGAAAGATGTGAGCAGAATAGAATGGAGCCAGGTGAGGCATCAAGTGGGAATAAGGAGAGGGAAGAGAGAATGAGAAGGGTTTGGTTGGCAATTTCTCAGCGAACAGTGCAATGGTTTGCAGGACAAGAAAGAAACTCAACAGATTTAGAGCTAAAACATTTAGCTCCGAATGTTTGA 1224 0.4101 MHWSIITGGMISIFRNMPFKNHVPVFIMMGLSFISNVQAQYSETDTMQDFPQPVRPSKMVVIVALSILFTISFILLVYIRFCRTTPLELINRRNLHSPNFQALTQSRSRSSGIDKKVIEALPFFMFSSLKGSKQGLDCTVCLSQFEDTEILRLLPKCKHAFHMNCIDKWFESHATCPLCRNNIDPLDIKNFNYSISSRSLRVPSNLTEDTNLEIFVHREPSHQGSSSSSRFNIGSRFWNLSSSSRKKLLVDQEVSGTNGTHVHKFYHKIVVSDVVRRSRWSDLNSSDMLSLKSEMIHHVSTGRFSPSNEFFCGNSSLSSIFNADESSLTLLNTAEKRSMSDIAHVPRFIERCEQNRMEPGEASSGNKEREERMRRVWLAISQRTVQWFAGQERNSTDLELKHLAPNV* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0759 407 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Pvu1g0759 407 SUPERFAMILY RING/U-box 133 186 - -
Pvu1g0759 407 SMART ring_2 138 179 IPR001841 -
Pvu1g0759 407 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 187 IPR013083 -
Pvu1g0759 407 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 314 401 - -
Pvu1g0759 407 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 31 308 - -
Pvu1g0759 407 Pfam Ring finger domain 137 180 IPR001841 -
Pvu1g0759 407 PANTHER RING-H2 FINGER PROTEIN ATL4J 31 308 - -
Pvu1g0759 407 PANTHER RING-H2 FINGER PROTEIN ATL4J 314 401 - -
Pvu1g0759 407 CDD RING-H2_PA-TM-RING 137 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0759 Pvu-Chr1 9990242 9991653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0759 55 407 C3H Transcription Factor Family AT2G20030 40.701 1.27e-75 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0759 K10664 - gmx:100803881 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu9g1117 9 16354851 16356325 Pvu1g0759 1 9990242 9991653 PCT