Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0742 ATGGATCAACGTGAAGAAGGCAAACAACCATCCCAGAAAGCACCATCACACAACCCAGTTGATAGTTCTGACAATATTGCTCTAGAAAATGGTTTGCAGGAGCAAAGTGGCACATTCACAACGTTTGCATCGTTAGAAAGTGGAAGTGAGAGTGAGTCCTCTTATAATGACCATGATGAGGATTCTGACTTTTTCCTGAGTCAAGAGTTTGAATCTGAACTTCAGTTTCTTGAGAGTGAAGGAAGCAATGAGGACGATGATGATGATGATGATGATGAGGAGGAGGAAATGGAAGATGAGATCGATGTGGATGAGTTGACCTATGAGGAGTTGATTGAGTTGGGAGACTTTATAGGGCAAGAGAAGAGAGGGTTATCAGCAAATGAAATTTGTTCATGTCTGCATTCTCACACTTACCATTCTGCTGAGAGCAAAAGTGGAATAAATCTTTGTGTGATTTGCCAGGTTGAATATGAAGAAGGTGAAGCATTGGTATCACTTCAGTGTGAGCACCCTTATCATACAGATTGCATAAGCAAGTGGCTTCAAATGAAGAAGGTTTGCCCTATATGTAACACTGAAATTTCTGCTCCCAAGATGGTTAGTTAA 609 0.4089 MDQREEGKQPSQKAPSHNPVDSSDNIALENGLQEQSGTFTTFASLESGSESESSYNDHDEDSDFFLSQEFESELQFLESEGSNEDDDDDDDDEEEEMEDEIDVDELTYEELIELGDFIGQEKRGLSANEICSCLHSHTYHSAESKSGINLCVICQVEYEEGEALVSLQCEHPYHTDCISKWLQMKKVCPICNTEISAPKMVS* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0742 202 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 3 199 - -
Pvu1g0742 202 SMART ring_2 151 191 IPR001841 -
Pvu1g0742 202 MobiDBLite consensus disorder prediction 1 101 - -
Pvu1g0742 202 MobiDBLite consensus disorder prediction 12 51 - -
Pvu1g0742 202 ProSiteProfiles Zinc finger RING-type profile. 151 192 IPR001841 -
Pvu1g0742 202 SUPERFAMILY RING/U-box 150 198 - -
Pvu1g0742 202 Pfam Ring finger domain 150 192 IPR001841 -
Pvu1g0742 202 MobiDBLite consensus disorder prediction 78 101 - -
Pvu1g0742 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 198 IPR013083 -
Pvu1g0742 202 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 3 199 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0742 Pvu-Chr1 9600266 9601036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0742 89 195 C3H Transcription Factor Family AT3G63530 45.455 2.27e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0742 K19045 - gmx:100780686 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0742 1 9600266 9601036 Pvu1g0742 1 9600266 9601036 ECH
Pvu9g1295 9 18604060 18604668 Pvu1g0742 1 9600266 9601036 PCT