Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0731 ATGAGAAACCCTTCATCAACATCAACAACTAAGAACAAGAAGAGTGGTGGTAACAGCACTGCTACCAGCTGCAGCAACAACAGCAACAACAACAATGGTAGCAGCAGCAATAACAATGGTAGCAGCAACAACACTCCATGCTGCACCAAGGTTGGGTTGAAGAGAGGACCATGGACACCAGAAGAAGATGAGGTGTTAGCCAATTACATTAAGAGAGAAGGAGAAGGGCGGTGGAGAACTCTCCCCAAGCGAGCTGGCCTTCTCCGCTGCGGCAAAAGCTGCCGTCTCCGATGGATGAACTACCTCCGCCCCTCCGTCAAACGCGGCCACATCGCCCCTGACGAGGAAGATCTCATCCTCCGCCTCCACCGCCTCCTTGGCAACCGGTGGTCTTTGATTGCTGGGAGGATTCCTGGAAGAACAGATAATGAAATAAAGAACTATTGGAATACCCATCTAAGTAAAAAACTCATTAGCCAAGGGATTGATCCCAGAACTCACAAGCCTCTCAACCCACCATCCATTATTATTCCTTCTTCTTCTACTACTACTACTTTCACTGTTCCTCCACCCTCTATGCCTCCTCCAATGATCATCAACCCTTGTCATGATCTCACTGCTGTTGACCAAGGAATTCATGCGATTCATCATTTGGGTCAACATCACCAACCTCCGGTCTCAAACCCCTTTGATAACAACAGCATTAACAATCAAGTGGCTGCTGTCACAGATGATGTTTCTGCAATGGGGTTCATGGACAGTGAGGACTGCAACTATGATATCAACATCAATTATTACTCAGATGATGCCTTTTCTTCCTTCCTCAACTCCTTGATCAATGATGATGCTTTTGCGTCGCAGCAGCACCACGTGCAAACAGAGCTCCCCAGTGAGCGTTGCATTCCACTGCCATGTGATGATCGTGTGGATGATCCTCTGGTTTCAATTACCACAGCTTCTACATCGCAGGGTTATGATGATGACCTTGGGGTTCTGTGGGAATCGCCTCTCGTGCCTTCTACTACTTTCACCCATCACGTTAACGATCCCATCATCAAGATGGCTCATGATCACCATCACCTCCATCAATAG 1092 0.478 MRNPSSTSTTKNKKSGGNSTATSCSNNSNNNNGSSSNNNGSSNNTPCCTKVGLKRGPWTPEEDEVLANYIKREGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGHIAPDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNPPSIIIPSSSTTTTFTVPPPSMPPPMIINPCHDLTAVDQGIHAIHHLGQHHQPPVSNPFDNNSINNQVAAVTDDVSAMGFMDSEDCNYDININYYSDDAFSSFLNSLINDDAFASQQHHVQTELPSERCIPLPCDDRVDDPLVSITTASTSQGYDDDLGVLWESPLVPSTTFTHHVNDPIIKMAHDHHHLHQ* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0731 363 ProSiteProfiles Myb-like domain profile. 50 102 IPR001005 -
Pvu1g0731 363 SMART sant 107 155 IPR001005 -
Pvu1g0731 363 SMART sant 54 104 IPR001005 -
Pvu1g0731 363 ProSiteProfiles Myb-like domain profile. 103 153 IPR001005 -
Pvu1g0731 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 103 157 IPR017930 -
Pvu1g0731 363 PANTHER TRANSCRIPTION REPRESSOR MYB5-LIKE 38 296 - -
Pvu1g0731 363 Gene3D - 112 172 - -
Pvu1g0731 363 Gene3D - 52 108 - -
Pvu1g0731 363 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 38 296 - -
Pvu1g0731 363 Pfam Myb-like DNA-binding domain 113 153 IPR001005 -
Pvu1g0731 363 Pfam Myb-like DNA-binding domain 55 102 IPR001005 -
Pvu1g0731 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 50 102 IPR017930 -
Pvu1g0731 363 CDD SANT 113 153 IPR001005 -
Pvu1g0731 363 CDD SANT 57 102 IPR001005 -
Pvu1g0731 363 MobiDBLite consensus disorder prediction 1 44 - -
Pvu1g0731 363 SUPERFAMILY Homeodomain-like 52 149 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0731 Pvu-Chr1 9405726 9407338 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0731 41 281 MYB Transcription Factor Family AT3G13540 56.017 4.39e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu1g0731 Myb_DNA-binding 7.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0731 K09422 - gmx:100797847 490.73