Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0730 ATGTCGAGGATTTGCGTGAAGAATCTTCCGAAACATGTTGCGGAGGATGAACTACGAGAATTCTTTTCTGAGAAAGGAATAATCACTGACGTTAGGCTCATGCGTACCAAAGATGGTAAGAGTCGACAATTTGCGTTTATAGGGTATCGAACCGAGAATGAAGCTCATGAAGCCATTCGATATTTCAATAATTCTTATCTTCGCACATCTAAAATTGCATGTGAGGTAGCACGAAAACTTGGGGATGAAAATCTTCCTCGTCCATGGGGTCGCCATTCGAAGAAGAAAGAGGACAAAGGGACTGCACCGGATGCGGGGAAACCTGCTAGAGCTAAGGGACGGCAAACAAATTTGAAGGACGGTGTGGATATTGATGACCCGCAGCTTCAGGATTTTCTTCAGGTCATGCAGCCTTGGGTTAACTCTAAGATGTGGGCAAATGATACTTCCGGTTTGACTGGTGTTGGTAACAACCAAGCAGTCTCCAATGAGGATAATGAAGGTGCATCAGTTTCAACTGATGAAAGTGGCTTATTAGAAGATGAATTTCTGGATATTTCTGAACCCAGCAGCAAGTCACCTGAACCTGAACGTGGTGAGGTCATTTCAGATATGGATTATTTCAAGAGTAGGGTGACGACAGAGTGGTCTGATTCTGAAAGTAGTGATGAAGATGATGACAATAGCAATGCTAATGATGCCTCATCTGTTGACAATGATGACAAAGATGATAATAGTGGGGTTAATGAAGATGAAAAAAATAGTGATCCGAGAAATGATGCTCGAGAGGTAGACCTGGAGGGCAAAGAAGATACTAGTGGAGAGGATGTTACCCATGAGAAGGCTCAAGTAAATGTGACTGAGCACAGGGAGCAATTATCAAAAACAGAAGACGTGAAAGGAGTTTTTGAGTCCTGTCGGTTGTTTGTCCGTAATCTGCCATACACCACCACTGAGGAGGAACTGGAAGAACATTTCAGTCAAATTGGTAGTGTCTCACAGGTTCATCTAGTTGTTGATAAAGATACAAAACGATCCAAAGGAATCGCATATATTCTATATACATCTTCAGAATCTGCAGCCAGGGCTCAGAAAGAGTTAGACAATTCAATCTTTCAAGGAAGATTGTTGCATGTAATGCCAGCCTTACAAAGACATTCAGAGAATCAAGAGAACAATGTTTTGAAGGACCAAAGCTCTAAAACCCTCAAAAAGCAGAGAGAGGAAAAAAGGAAAGCGAATGAAGCTAGTGGAGATACTAGAGCATGGAATAGTCTGTTCATGCGCCCTGATACAATTGTGGAAAACATTGCACGGAAGTTTGGTGTTGATAAAAGTGATTTACTTGACCGAGAAGCAGATGATCTTGCCGTACGTATTGCTCTAGGAGAGACTCAAGTGATTTCAGAAACAAAAAAGGCATTTAAAAATGCTGGCATAAATGTGGAGGCCTTGGAGGAACTTGCTAACAATAAAATAGATGGCGTAAAAAGAAGTAATCATGTGCTTTTGGTGAAGAACTTGCCTTATGGTTCCACAGAAAATGAACTTTCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAGACATTGGCACTGGTTGTTTTCCTCGAACCAGCGGAAGCTCGAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTATAAGGATGCTCCATTATACTTGGAGTGGGCTCCTTCCAATATTCTTAGCCAAAGTTCAACATCAAACAATAATGACATGACTGGTGCAATTGGAGAAAACGATGCCAAGAGGCAGATATTGGAGCAGCATGTGGAAAGAATAACAGATGTAGATATTGATCCAGACAGAGTAGAGGCTCGGTCACTATTTGTCAAGAACCTAAATTTCAAGACAACAGATGAAACTCTGAGGAAACGTTTTAGTGAACTCATGAAAGAGGGAAGAATTTTGAGTGTGAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGGTTTGGATTTGTTGAGTTTGACTCTCCTGAAACTGCTACAAATGTTTGCAGAGATTTGCAGGGGACAGTTTTGGACAGCCATGCTCTTATTTTACAACCTTGTCATGTCAAGAATGATGGGCAAAAGCAAAAGGCAATTGAGAAGGATAAGAGTTCAACAAAATTGCTCGTAAGAAATGTTGCTTTTGAGGCAACAGAGAAGGATCTAAGACGATTGTTTAGCCCATTTGGCCAGATTAAAAGCTTGAGGTTGCCAACGAAGTTTGGAAGCCATAGAGGCTTTGCTTTTGTAGAGTATGTTACCCAGCAGGAAGCACAAAATGCGCTCAAAGCACTTTCAAGCACCCATCTCTACGGGAGACATCTGGTGATAGAGAGAGCCAAAGAAGGTGAGAGTTTGGAAGAACTGCGAGCACGAACAGCTGCCCAATTCAGTGACGATCACAATGGATTTCAAGGTGCTATTAAATTATCCAAGAAAAGAAAGGACGTTGACATCTTAGATGAAGGGAAGATGAAGTTTGGAAGGTTTGCTGAGTAG 2544 0.4135 MSRICVKNLPKHVAEDELREFFSEKGIITDVRLMRTKDGKSRQFAFIGYRTENEAHEAIRYFNNSYLRTSKIACEVARKLGDENLPRPWGRHSKKKEDKGTAPDAGKPARAKGRQTNLKDGVDIDDPQLQDFLQVMQPWVNSKMWANDTSGLTGVGNNQAVSNEDNEGASVSTDESGLLEDEFLDISEPSSKSPEPERGEVISDMDYFKSRVTTEWSDSESSDEDDDNSNANDASSVDNDDKDDNSGVNEDEKNSDPRNDAREVDLEGKEDTSGEDVTHEKAQVNVTEHREQLSKTEDVKGVFESCRLFVRNLPYTTTEEELEEHFSQIGSVSQVHLVVDKDTKRSKGIAYILYTSSESAARAQKELDNSIFQGRLLHVMPALQRHSENQENNVLKDQSSKTLKKQREEKRKANEASGDTRAWNSLFMRPDTIVENIARKFGVDKSDLLDREADDLAVRIALGETQVISETKKAFKNAGINVEALEELANNKIDGVKRSNHVLLVKNLPYGSTENELSKMFGKFGSLDKIILPPTKTLALVVFLEPAEARAAFRGLAYKRYKDAPLYLEWAPSNILSQSSTSNNNDMTGAIGENDAKRQILEQHVERITDVDIDPDRVEARSLFVKNLNFKTTDETLRKRFSELMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSPETATNVCRDLQGTVLDSHALILQPCHVKNDGQKQKAIEKDKSSTKLLVRNVAFEATEKDLRRLFSPFGQIKSLRLPTKFGSHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLVIERAKEGESLEELRARTAAQFSDDHNGFQGAIKLSKKRKDVDILDEGKMKFGRFAE* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0730 847 CDD RRM3_RBM19_RRM2_MRD1 307 380 - -
Pvu1g0730 847 CDD RRM5_RBM19_like 621 702 IPR034423 -
Pvu1g0730 847 Gene3D - 595 713 IPR012677 -
Pvu1g0730 847 Gene3D - 1 121 IPR012677 -
Pvu1g0730 847 MobiDBLite consensus disorder prediction 155 173 - -
Pvu1g0730 847 SUPERFAMILY RNA-binding domain, RBD 609 708 IPR035979 GO:0003676
Pvu1g0730 847 Coils Coil 279 299 - -
Pvu1g0730 847 MobiDBLite consensus disorder prediction 83 124 - -
Pvu1g0730 847 CDD RRM6_RBM19_RRM5_MRD1 721 795 - -
Pvu1g0730 847 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 721 797 IPR000504 GO:0003723
Pvu1g0730 847 Coils Coil 396 416 - -
Pvu1g0730 847 Gene3D - 483 594 IPR012677 -
Pvu1g0730 847 Gene3D - 714 818 IPR012677 -
Pvu1g0730 847 MobiDBLite consensus disorder prediction 83 105 - -
Pvu1g0730 847 Gene3D - 209 394 IPR012677 -
Pvu1g0730 847 SUPERFAMILY RNA-binding domain, RBD 304 388 IPR035979 GO:0003676
Pvu1g0730 847 SMART rrm1_1 622 700 IPR000504 GO:0003723
Pvu1g0730 847 SMART rrm1_1 3 75 IPR000504 GO:0003723
Pvu1g0730 847 SMART rrm1_1 502 569 IPR000504 GO:0003723
Pvu1g0730 847 SMART rrm1_1 307 380 IPR000504 GO:0003723
Pvu1g0730 847 SMART rrm1_1 722 793 IPR000504 GO:0003723
Pvu1g0730 847 PANTHER RNA-BINDING PROTEIN 19-RELATED 2 824 - -
Pvu1g0730 847 SUPERFAMILY RNA-binding domain, RBD 498 590 IPR035979 GO:0003676
Pvu1g0730 847 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 79 IPR000504 GO:0003723
Pvu1g0730 847 MobiDBLite consensus disorder prediction 236 293 - -
Pvu1g0730 847 MobiDBLite consensus disorder prediction 185 218 - -
Pvu1g0730 847 SMART rrm2_1 307 380 IPR003954 GO:0003676
Pvu1g0730 847 SMART rrm2_1 3 75 IPR003954 GO:0003676
Pvu1g0730 847 SMART rrm2_1 722 793 IPR003954 GO:0003676
Pvu1g0730 847 SMART rrm2_1 622 702 IPR003954 GO:0003676
Pvu1g0730 847 CDD RRM4_RBM19_RRM3_MRD1 501 572 - -
Pvu1g0730 847 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 824 - -
Pvu1g0730 847 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 501 573 IPR000504 GO:0003723
Pvu1g0730 847 MobiDBLite consensus disorder prediction 398 417 - -
Pvu1g0730 847 CDD RRM1_MRD1 2 77 - -
Pvu1g0730 847 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 384 IPR000504 GO:0003723
Pvu1g0730 847 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 623 697 IPR000504 GO:0003723
Pvu1g0730 847 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 503 564 IPR000504 GO:0003723
Pvu1g0730 847 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 723 790 IPR000504 GO:0003723
Pvu1g0730 847 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 72 IPR000504 GO:0003723
Pvu1g0730 847 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 378 IPR000504 GO:0003723
Pvu1g0730 847 SUPERFAMILY RNA-binding domain, RBD 3 83 IPR035979 GO:0003676
Pvu1g0730 847 SUPERFAMILY RNA-binding domain, RBD 717 800 IPR035979 GO:0003676
Pvu1g0730 847 MobiDBLite consensus disorder prediction 387 418 - -
Pvu1g0730 847 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 621 704 IPR000504 GO:0003723
Pvu1g0730 847 MobiDBLite consensus disorder prediction 155 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0730 Pvu-Chr1 9381777 9391336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0730 614 813 Eukaryotic Initiation Factors Gene Family AT1G49760 30.698 7.57e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0730 K14787 - gmx:100798742 1351.65