Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0727 ATGTTGAAGACGAAAGCATTCCAAGGTGCTCACGTGTTCATGTCGCGAAACCTCGTGCCGCCGGAAGTCTTCGACGCGCTGCACGATGCCGTTAAAGATAACGGCGCTGAGCTCCACCTCTGCTGCGACCCCTCCCGTAACGGCCCCAACGATTACCACATCATTGCTTCCAGAAAACACGAAAAGTTCGATCATCTCAAATCCAAGGGCTGCAAGTTGCTCGGTCCTAGATGTGTTCTTTCGTGTGCCAAAGGTGGAAGGTCTCTGCCTAAACAAGGCTTCACTTGTTGTCTTGCCATGGACGGCGTCAAAATACTTGCATCTGGTTTTGATACGGAAGAGAAGGTTAAGATAGATGAATTAGTGGCTGAAATGGGGGGAGTGCTACACACTAAGACATCGTTGGATCTGAACTTTGTCCTTGTGAAAAATGTTTTAGCTGCAAAGTACAAGTGGGCTTTGAATGAATTGAAGAAACCAATAGTCACGTATGAATGGTTAAAACAATGCTCGGAGGAGCATCGTGTTGTTCCTCAAGAGTCATACAAGGTCCTTCCTTTCTCTGGGTTAAAGATTTGTGTTACTGGAATTCCAGCAGATGTTCGTAAAGAGATGGAGAAGCTTATTTTACAAAATGGTGGAAAATACTCCGCGGAATTGACAAAGAATTGCACACATTTGATTTCTGAGGCTCCTCAAGGTGACAAGTATAAGGTAGCAAAACGATGGGGCCACATTCATATTGTGATAAGTAAATGGTTTGATCAATCAATTGCTCGAAGAGCATGTCTGAATGAGGAGTTCTTCCCTGTTCTGCATGGATCTGTATCTTCACATAAAGTAACTAGGGACTTAACAATGCAACACTGCCAAGAAAAGGATATTGGGAAATTGCAATCTGCGGCATCCTCAGGTGCTACAGATTCAAATGTGCAAGTTTCTTGCTCTGAGTTTGTGGAAAGAGATCAAGAAGCTATGCCATCAGAATATATGTCCTCTGTTTCTTGTAGATTTGCTAAGGAGGCAGATGCTGAACCTCCATTGCAGGCCAGTGGTGACTTGAACTTTGACGGTGTTGTTGCTGATGATTCTGAATCTGATGATAATGACTTGTACTTATCAGAGTGCAGAATATTACTAGTTGGTTTTGAAGCTCTAGAAATGCGGAAACTAGTTAATATTGTGCGTAAAGGTGGAGGCTCCCGGTATATGTGTTTTAATGACAAATTGACACACATAGTAGTTGGGAATCCTACTGAAATGGAAAAGAAGGATGTGAGGAGTCTTGCTGCTTTAGGTGTAATTTATGTTGTTAAAACCACATGGCTTGAAGATTGCGACCATAAAAAGATAGAAGTCCCTGTTCTTAGGAGACACATTGCATATGATCTACTTCATCCAAAAGCAAGCTTGGTAAAAGGAACTGTAACAGGAAGCACATCTATGGATCACAGTAAAAGCTCCAGTTGTCATCAAAGCTCGCATCAGGTGGACTTCAAAATTGTGCAGCCAGAATCTTTGGAGAAAAGAAAAGAAGAGATACAAGATATGGATATAAATGGTTACTCATTCCGTAAAGCAAATTGTAGAACTATGTTGCAAAATCAACTTCCTGATAGTAAATTGAGCACACAAAGAATGAGCCGGCCTGACTTCAGTGTTCATTATGAAAAATCTACAAATGTTTTCAGAGGAAAATTGTTTTGTTTCTCAAATTTGTTTCCTGAAGAAAAGAGAGGTGAGATTGTTCAATGGATAAGTCAAGGTGGAGGAGAGGTAATAAGTGGGAAAACAAAACAGATTGTCCACTACACTGTTGAGTGTCATGGTGTAACACCCATGTTGACTGGTGATTCCACGAGTTTGTACATTTCCAGTCATTGGATACGATCTTGTTTGGAGGCTGGATCCTTGCTGGATGTTGACACTCACATTCTTTATTCTCCACTTCCCTGCCATGTTCCCTTGCCTGGATTTGAAAGATTCCGGTTTTGTGTTTCACAGTATGAGGAGAAAGACAGGAATCTGCTAAGAAACTTGTGTTTTGTTCTAGGAGCTAAATTTGGGGAGAAGTTGACTAAGAAGGTTACGCATTTGTTGTGTAAATTCACGAATGGACCCAAGTATGATGGTGCTTGTAAATGGGGGATTCAATCAGTTACATCTGAATGGATATTTGAATGCATCAAACAGAATGGAGTTGTTGCCACTGATCGATTTTTACCAAAAGAAGTAACTGCTCAAGATCGAGAGGCAGGAATTTGCACTGGGAGTCAATTTCCTACCCAGGCTGCTCAAATGATAAGTGACATGCCCTCGCAGTTGTCAAGTCAATCACAAATTTTGAGAGGCATCACAAATAAAAATGTGGGTTGTGGAGTTGATAATCATGAGGCCAATTTCAAGAAACCAAGTGTTTATAGCAAAAAGGCAAGACTTGTGGAAGAACCTTGCCTGTCTACTAAGATGCCTTTCGCATCAAATTCAGGTATTCATGCCTATGAAAAGAATTTTTCTGAAGACAATATGATAATAGATGCTGGGGAGGTGTGTCCTACTGTTCCTGATGTTGCTTCTGCAATTGAGGACTTGTTAGAGCAGACTAGTAAGATGCATGGTCAGAGGTCCCCAGCACAGACAGGGTGTCAGAGAGGTATTTACCCATCTAATCTTTCAGTCCTTGGTGAAGATAATTCCAATCCTCATACCGTCTTTGGGTTATCTAAACACTGGTCAAACAGAAGTGGCAGAAAAGATGATAATGGGGAGGCTTCTGAAGACAGACGAGCAGGAATATACGATGGATTTAGTGAAACACAGACAGAATCTCAGGTTGTTAGTTATGAAGAAGATTTATCAGGAAGGCAAAGGCTTATAGATATAATCCGAACTCGAAGTGGCACGCAGTGA 2910 0.4151 MLKTKAFQGAHVFMSRNLVPPEVFDALHDAVKDNGAELHLCCDPSRNGPNDYHIIASRKHEKFDHLKSKGCKLLGPRCVLSCAKGGRSLPKQGFTCCLAMDGVKILASGFDTEEKVKIDELVAEMGGVLHTKTSLDLNFVLVKNVLAAKYKWALNELKKPIVTYEWLKQCSEEHRVVPQESYKVLPFSGLKICVTGIPADVRKEMEKLILQNGGKYSAELTKNCTHLISEAPQGDKYKVAKRWGHIHIVISKWFDQSIARRACLNEEFFPVLHGSVSSHKVTRDLTMQHCQEKDIGKLQSAASSGATDSNVQVSCSEFVERDQEAMPSEYMSSVSCRFAKEADAEPPLQASGDLNFDGVVADDSESDDNDLYLSECRILLVGFEALEMRKLVNIVRKGGGSRYMCFNDKLTHIVVGNPTEMEKKDVRSLAALGVIYVVKTTWLEDCDHKKIEVPVLRRHIAYDLLHPKASLVKGTVTGSTSMDHSKSSSCHQSSHQVDFKIVQPESLEKRKEEIQDMDINGYSFRKANCRTMLQNQLPDSKLSTQRMSRPDFSVHYEKSTNVFRGKLFCFSNLFPEEKRGEIVQWISQGGGEVISGKTKQIVHYTVECHGVTPMLTGDSTSLYISSHWIRSCLEAGSLLDVDTHILYSPLPCHVPLPGFERFRFCVSQYEEKDRNLLRNLCFVLGAKFGEKLTKKVTHLLCKFTNGPKYDGACKWGIQSVTSEWIFECIKQNGVVATDRFLPKEVTAQDREAGICTGSQFPTQAAQMISDMPSQLSSQSQILRGITNKNVGCGVDNHEANFKKPSVYSKKARLVEEPCLSTKMPFASNSGIHAYEKNFSEDNMIIDAGEVCPTVPDVASAIEDLLEQTSKMHGQRSPAQTGCQRGIYPSNLSVLGEDNSNPHTVFGLSKHWSNRSGRKDDNGEASEDRRAGIYDGFSETQTESQVVSYEEDLSGRQRLIDIIRTRSGTQ* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0727 969 Pfam BRCT domain, a BRCA1 C-terminus domain 560 643 IPR001357 -
Pvu1g0727 969 MobiDBLite consensus disorder prediction 912 933 - -
Pvu1g0727 969 Gene3D BRCT domain 97 185 IPR036420 -
Pvu1g0727 969 Gene3D BRCT domain 36 94 IPR036420 -
Pvu1g0727 969 ProSiteProfiles BRCT domain profile. 659 742 IPR001357 -
Pvu1g0727 969 SUPERFAMILY BRCT domain 625 743 IPR036420 -
Pvu1g0727 969 CDD BRCT 103 170 - -
Pvu1g0727 969 Pfam twin BRCT domain 663 724 IPR001357 -
Pvu1g0727 969 Pfam twin BRCT domain 190 253 IPR001357 -
Pvu1g0727 969 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 7 956 - -
Pvu1g0727 969 SUPERFAMILY BRCT domain 561 648 IPR036420 -
Pvu1g0727 969 Gene3D BRCT domain 653 747 IPR036420 -
Pvu1g0727 969 Gene3D BRCT domain 555 652 IPR036420 -
Pvu1g0727 969 SUPERFAMILY BRCT domain 186 270 IPR036420 -
Pvu1g0727 969 SMART BRCT_7 97 174 IPR001357 -
Pvu1g0727 969 SMART BRCT_7 560 636 IPR001357 -
Pvu1g0727 969 SMART BRCT_7 370 450 IPR001357 -
Pvu1g0727 969 SMART BRCT_7 184 261 IPR001357 -
Pvu1g0727 969 SMART BRCT_7 4 86 IPR001357 -
Pvu1g0727 969 SMART BRCT_7 656 732 IPR001357 -
Pvu1g0727 969 CDD BRCT_TopBP1_rpt2_like 657 732 - -
Pvu1g0727 969 MobiDBLite consensus disorder prediction 905 942 - -
Pvu1g0727 969 ProSiteProfiles BRCT domain profile. 182 271 IPR001357 -
Pvu1g0727 969 SUPERFAMILY BRCT domain 368 452 IPR036420 -
Pvu1g0727 969 ProSiteProfiles BRCT domain profile. 558 646 IPR001357 -
Pvu1g0727 969 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Pvu1g0727 969 CDD BRCT_TopBP1_rpt2_like 186 261 - -
Pvu1g0727 969 Pfam BRCA1 C Terminus (BRCT) domain 100 170 IPR001357 -
Pvu1g0727 969 Gene3D BRCT domain 186 271 IPR036420 -
Pvu1g0727 969 Gene3D BRCT domain 359 456 IPR036420 -
Pvu1g0727 969 ProSiteProfiles BRCT domain profile. 368 446 IPR001357 -
Pvu1g0727 969 SUPERFAMILY BRCT domain 58 183 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0727 Pvu-Chr1 9341353 9356410 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0727 1 966 Core DNA Replication Machinery Family AT1G77320 49.263 0.0 891
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0727 K10728 - gmx:100804966 1553.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0727 1 9341353 9356410 Pvu1g0727 1 9341353 9356410 ECH