Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0720 ATGCTTATTCGATACACATACAAGGAGATTAAGAAGATGGCCACAGGTTTTAATGAAAAATTAGGTGAAGGAGGTTATGGCTCTGTATTCAAGGGAAAGTTGCGTAGTGAACCTTCTGTTGCTATAAAAGTGTTACGAAAGTCAAAAGGTAATGGACAAGACTTTATCAATGAAGTTGCAACCATTGGAAGAATACATCATCAAAATGTAGTGCAGTTAATTGGATATTGTGCTGAAGGCTCAAAACGTGCCCTTGTTTATGAGTTCATGCCCAATGGATCTCTTGACAAATTTATATTTTCAAGTGAAGGAAATACGCATTTAACTTATGACACAATATATAATATAGCAATGGGAGTAGCACATGGGATTACATATTTACACCATGGTTGTGAGATGCAGATTTTGCATTTTGACATCAAACCCCACAACATCCTACTTGATGAAAAATTCACCCCAAAAGTCTCTGACTTCGGATTGGCAAAACTATATCCAATAGACAAGAGTGTTGTGACTATGACAGCAGCAAGAGGGACAATTGGATACATGGCTCCAGAATTGTTTTATACAAATATTGGAAAAATATCAGATAAGTCTGATGTTTATAGTTTTGGAATGCTTTTGATGGAGATAGCAAGTAAGAGGAAAAACTTAAACCCTCATGCAGAGCGTTCAAGCCAACTTTACTTTCCCTTTTGGATTTATGATCAACTTGACAAAGAGAAAGATATAGAAATGGAAGATGTCATAGAGGAAGAGAAGAAAATTGCAAAAAAACTGATGATAGTTTCACTTTGGTGCATACAATTAAAACCAAATGATCGTCCTTCCATTAATAAAGTAGTCGAAATGCTTGAAGGAGACATTGAGAACCTTAAAATACCTCCAAAGCCTTCTCTATATCCACATGAAACATTGGAAAAACTTTGCTCTAACCAAACAACATTGCCTCAGTTCATTAGTTCTTCAACCAATTCCATGGAGATTGCCACTAATGCTCCACTGGATGAAAGTACACTACAAGAAAATCATCATGAAATAGAAACCAATTTTTAG 1056 0.3561 MLIRYTYKEIKKMATGFNEKLGEGGYGSVFKGKLRSEPSVAIKVLRKSKGNGQDFINEVATIGRIHHQNVVQLIGYCAEGSKRALVYEFMPNGSLDKFIFSSEGNTHLTYDTIYNIAMGVAHGITYLHHGCEMQILHFDIKPHNILLDEKFTPKVSDFGLAKLYPIDKSVVTMTAARGTIGYMAPELFYTNIGKISDKSDVYSFGMLLMEIASKRKNLNPHAERSSQLYFPFWIYDQLDKEKDIEMEDVIEEEKKIAKKLMIVSLWCIQLKPNDRPSINKVVEMLEGDIENLKIPPKPSLYPHETLEKLCSNQTTLPQFISSSTNSMEIATNAPLDESTLQENHHEIETNF* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0720 351 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
Pvu1g0720 351 SMART serkin_6 15 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0720 351 Gene3D Transferase(Phosphotransferase) domain 1 90 299 - -
Pvu1g0720 351 Pfam Protein tyrosine and serine/threonine kinase 17 285 IPR001245 GO:0004672|GO:0006468
Pvu1g0720 351 ProSiteProfiles Protein kinase domain profile. 15 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0720 351 CDD STKc_IRAK 21 287 - -
Pvu1g0720 351 ProSitePatterns Protein kinases ATP-binding region signature. 21 43 IPR017441 GO:0005524
Pvu1g0720 351 PANTHER RUST RESISTANCE KINASE LR10-RELATED 3 316 IPR045874 GO:0004672
Pvu1g0720 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Pvu1g0720 351 SUPERFAMILY Protein kinase-like (PK-like) 5 286 IPR011009 -
Pvu1g0720 351 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 3 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0720 Pvu-Chr1 9221814 9222869 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0720 1 303 Receptor kinase-like Gene Family AT4G18250 51.923 4.13e-110 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pvu1g0720 PK_Tyr_Ser-Thr 2.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0720 - - pvu:PHAVU_001G069200g 638.647