Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0716 ATGCCTATTCGATACACATACAAGGAAATTAAGAAGATGGCCAAAGGTTTTGGTGAAAAATTGGATGAAGGAGGTTATGGCTCTGTATTTAAAGGAAAGTTGCGTAGTGGATCTTGTGTCGCTATAAAAGTGTTACAAAACTCAAAAGGTAATGGACAAGACTTTATCAATGAAGTTGCAACAATTGGAACAATACATCATCAAAATGTAGTGCACTTAATTGGATATTGTGCTGAGAGCTCAAAAAGAGCCATTGTTTATGAGTTCATGCCCAATGGATCTCTAGATAAATTTATATTTTCGAGAGAAGAAAATCCACATTTAACCTATGACACAATATATAATATAGCAATTGGAGTAGCACGTGGGATTTCATATCTACACCATGGGTGTGAGATGCAGATTTTGCATTTTGACATTAAACCCCACAACATCCTGCTTGATGAAAAATTCACCCCAAAAGTCTCTGACTTCGGATTGGCAAAACTATATCCAACAAACAAAAGTGTTGTGACTATGACAGCAGCAAGAGGGACAATTGGATACATGGCTCCAGAATTGTTTTATACAAATATAGGAAGAATATCATATAAGTCTGATGTTTATAGTTTTGGAATGCTTCTGATGGAGATAGCAAGCAAGAGGAAAAACTTAAACCCCCATGCCGAGCATTCAAGCCAACTTTACTTTCCCTTTTGGATTTATGATCAACTTGACAAAGAGAGAGATATAGAAATCCAAGATGTCATAGAGGATGAGAAGAAAATTACAAAAAAGATGATGATAGTTTCACTTTGGTGCATACAATTAAAACCAAATGATCGTCCTTCCATTAATAAGGTAGTCGAAATGCTTGAAGGAGACATTGAGAACCTTGAAATACCTCCAAAGCCTTCTCTGTATCCATATGAAACATTGAAAAGAATCTTCTCTGACCAAACAACATTGCCTGACTTCATTAGTTCTTCAAGTTATTCCATGGAGATTGCCACTAATGCTCCACTAGATGCAAGTATTTGA 1020 0.3598 MPIRYTYKEIKKMAKGFGEKLDEGGYGSVFKGKLRSGSCVAIKVLQNSKGNGQDFINEVATIGTIHHQNVVHLIGYCAESSKRAIVYEFMPNGSLDKFIFSREENPHLTYDTIYNIAIGVARGISYLHHGCEMQILHFDIKPHNILLDEKFTPKVSDFGLAKLYPTNKSVVTMTAARGTIGYMAPELFYTNIGRISYKSDVYSFGMLLMEIASKRKNLNPHAEHSSQLYFPFWIYDQLDKERDIEIQDVIEDEKKITKKMMIVSLWCIQLKPNDRPSINKVVEMLEGDIENLEIPPKPSLYPYETLKRIFSDQTTLPDFISSSSYSMEIATNAPLDASI* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0716 339 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 2 316 - -
Pvu1g0716 339 Pfam Protein tyrosine and serine/threonine kinase 17 285 IPR001245 GO:0004672|GO:0006468
Pvu1g0716 339 PANTHER RUST RESISTANCE KINASE LR10-RELATED 2 316 IPR045874 GO:0004672
Pvu1g0716 339 SMART serkin_6 15 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0716 339 SUPERFAMILY Protein kinase-like (PK-like) 5 286 IPR011009 -
Pvu1g0716 339 Gene3D Phosphorylase Kinase; domain 1 1 89 - -
Pvu1g0716 339 Gene3D Transferase(Phosphotransferase) domain 1 90 301 - -
Pvu1g0716 339 CDD STKc_IRAK 21 287 - -
Pvu1g0716 339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Pvu1g0716 339 ProSiteProfiles Protein kinase domain profile. 15 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0716 Pvu-Chr1 9088698 9091228 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0716 4 324 Receptor kinase-like Gene Family AT5G38260 50.000 5.66e-109 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pvu1g0716 PK_Tyr_Ser-Thr 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0716 - - pvu:PHAVU_001G069500g 687.952