Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0709 ATGTGTTTTCGCTTGGTTAGAACAATAAATGGACAAAACAAAAATATTGAATATTACGGTGCAAATCAATTAGTATTAATTAAGTTGGGACAGTATGTTATACCATACTTCATAGTTAGATATGTTGTTGGCACCATATTGTTTATTGCTCTTTTGACGTATAAGTGGAGAAGAAGGCATTCGTCCGAATACGAAAATATTGAAAGTTATTTAGAGCAAAATAGCTTGATGTCTATTCGATACACATACAAGGAGATTAAGAAGATGGCCACAGGTTTCAATGAAAAATTAGGTGAAGGAGGTTATGGCTCTGTATTCAAGGGAAAGTTGCGTAGTGGACCTTCTGTTGCTATAAAAGTGTTACGAAAATCAAAAGGTAATGGACAAGACTTTATCAATGAAGTTGCAACCATTGGAAGAATACATCATCAAAATGTAGTGCAGTTAATTGGATATTGTGCTGAAAGCTCAAAACGTGCCCTTGTTTGTGAGTTCATGCCCAATGGATCTCTTGACAAATTTATATTTTCAAGTGAAGGAAATATGCATTTAACTTATGACACAATATATAATATAGCAATGGGAGTAGCACATGGGATTACATATTTACACCATGGTTGTGAGATGCAGATTTTGCATTTTGACATCAAACCCCACAACATCCTACTTGATGAAAAATTCACCCCAAAAATCTCTGACTTTGGATTGGCAAAACTATATCCAATAGACAAGAGTGTTGTGACTATGACAGCAGCAAGAGGGACAATTGGATACATGGCTCCAGAATTGTTTTATACAAATATTGGAAAAATATCAGATAAGTCTGATGTTTATAGTTTTGGAATGCTTCTGATGGAGTTAGCAAGCAAGAGGAAAAACTTAAACCCCCATGCAGAGCGTTCAAGCCAACTTTATTTTCCCTTTTGGATTTATGATCAACTTGACAAAGAGAAAGATATAGAAATGGAAGATGTCATAGAGGATGAGAAGAAAATTGCAAAAAAAATTATGATAGTTTCACTTTGGTGCATACAATTAAAACCAAATGATCGTCCTTCCATGAATAAAGTAGTCGAAATGCTTGAAGGAGATATTGAGAACCTTAAAATACCTCCCAAGCCTTCTCTGTATCCACGTGAAACTTTGGAAAGAATCTGCTTTGACCAAACAACAATGTCTGAGTTCATTAGTTCTTCAAGCTATTCCATGGGGATTGTCACTAATGATCCACTAGATGAAAGTATTTAA 1248 0.3486 MCFRLVRTINGQNKNIEYYGANQLVLIKLGQYVIPYFIVRYVVGTILFIALLTYKWRRRHSSEYENIESYLEQNSLMSIRYTYKEIKKMATGFNEKLGEGGYGSVFKGKLRSGPSVAIKVLRKSKGNGQDFINEVATIGRIHHQNVVQLIGYCAESSKRALVCEFMPNGSLDKFIFSSEGNMHLTYDTIYNIAMGVAHGITYLHHGCEMQILHFDIKPHNILLDEKFTPKISDFGLAKLYPIDKSVVTMTAARGTIGYMAPELFYTNIGKISDKSDVYSFGMLLMELASKRKNLNPHAERSSQLYFPFWIYDQLDKEKDIEMEDVIEDEKKIAKKIMIVSLWCIQLKPNDRPSMNKVVEMLEGDIENLKIPPKPSLYPRETLERICFDQTTMSEFISSSSYSMGIVTNDPLDESI* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0709 415 Gene3D Transferase(Phosphotransferase) domain 1 166 370 - -
Pvu1g0709 415 Pfam Protein kinase domain 94 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0709 415 PANTHER RUST RESISTANCE KINASE LR10-RELATED 26 390 IPR045874 GO:0004672
Pvu1g0709 415 Gene3D Phosphorylase Kinase; domain 1 64 165 - -
Pvu1g0709 415 CDD STKc_IRAK 97 363 - -
Pvu1g0709 415 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 26 390 - -
Pvu1g0709 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Pvu1g0709 415 SUPERFAMILY Protein kinase-like (PK-like) 76 362 IPR011009 -
Pvu1g0709 415 ProSiteProfiles Protein kinase domain profile. 91 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0709 415 ProSitePatterns Protein kinases ATP-binding region signature. 97 119 IPR017441 GO:0005524
Pvu1g0709 415 SMART serkin_6 91 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0709 Pvu-Chr1 8969072 8970833 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0709 42 376 Receptor kinase-like Gene Family AT4G18250 49.133 2.94e-108 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pvu1g0709 Pkinase 6.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0709 - - pvu:PHAVU_001G069200g 677.937