Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0690 TATTCACATGAGCCTTTGGGGAATGTTGTACTAAAGCATTTATATTTATATCATTCATTAGGCAATGATAATGGTGGTGTGGAGTGGTGTATAAGGGAAGCACTTATGATTCGTCCTAAAATTAGTTTTAGAAGTTCACATATCCTGCTTACAATTGAAACTTTTAAGATTGACTACAATGGGCAAGAATGCTCTCCAGAATTAGAGTGTTTGCTTCATAGATTACAGAGTGAAGCTAATGGGCAAGAAAATGCTGTACATGATGGATTTTCTAGTAAGTCAGATGTCCATGGTGCAACTAAAAGGTGTCAGCGTGTGTTCTGCGATGTCTTAGCCTCTGAGAAGTTTAGTTCATTATGTAAAATACTGAAACCTGAAACTGTATTTGACTTTAGCCTGATAAACTCAAGGATGAAAGAGCACGCTTATGAACAATCGCCTACACTTTTCTTATCTGATCTTCAACAGGTTTGGCAAAAGCTTCAAAATACTGGTCATCAGATTGTAGCTATTGCCAGGAGCCTCTCCAACCTGTCAAAAGCTTCATTCTGTGAGCGGGTGGGGATTTCTGCGCACAGATCCTTTGTAGACGAAAAGCAAGTGGAATCAATCTCTCACATGAAGCCAGAGAAGACAGTAGCATGTGTTACATCCAAAACTGGCAGTTGCAGGCATTGTGGAGACAAAGCAGAAGGTGTAGACTGTTTGGTTTGTGATTCATGTGAAGAGATGTATCATCTGTCTTGTATAGAGCCTTATGTGAAAGAAGTACCCCGCAAAAGCTGGTTCTGTGCCAATTGTACTGCCAGAGGAATTGGATGTCAACATGAGAACTGTGTGGTGTGTGAACGGTTGAATGTCCCGAAGACACTGGACAACATTGTTGGCAAGGAAAGCATCCCTACAAAAGAGGAAAAACCGAATGAATTGGAAGAGAATCCAAATTGTACTTGTGATGGGATTCCAGTTTCCATAGGTGGGAGACATCCATCTGTCTGCAAAACTTGTAAAATAGCGGTGCGTGGTGGAAAAATAAAAATATGTGGTCACTTATTTTGCCCCAGTAAATACTACCATGTAAGGTGTTTGTCAACTAAGCAGCTTAAGACATACGGTCAATGTTGGTATTGCCCTTCTTGTATTTGCCAAGTCTGCTTCACTGACAAAGATGATGATAGGATTGTACTCTGTGATGGCTGTGATCATGCATACCACGTGTACTGTATGAAACCTCCGCTAAATTATATTCCTACAGGGAAATGGTTCTGCATAAAATGTGAACCCGGGATACTAGCAATACGCCAGGCAAGGAAGGCATACGAGAGCAAGAAAGGGAAAATTGGTCCGAATGATTTAAAGCCAAATGAAGACATTGACCAGAAATGGAACAGAAAACGTGGACGGGAAACCGACACAGTCGGAGGAATGGACATGCTTATAAATGCAGCAAATACTCTGAAATTTGAAGAGAACATGAATGCAATCCAGATTGAGTCAGAGAGAACATTAACATAA 1515 0.4073 YSHEPLGNVVLKHLYLYHSLGNDNGGVEWCIREALMIRPKISFRSSHILLTIETFKIDYNGQECSPELECLLHRLQSEANGQENAVHDGFSSKSDVHGATKRCQRVFCDVLASEKFSSLCKILKPETVFDFSLINSRMKEHAYEQSPTLFLSDLQQVWQKLQNTGHQIVAIARSLSNLSKASFCERVGISAHRSFVDEKQVESISHMKPEKTVACVTSKTGSCRHCGDKAEGVDCLVCDSCEEMYHLSCIEPYVKEVPRKSWFCANCTARGIGCQHENCVVCERLNVPKTLDNIVGKESIPTKEEKPNELEENPNCTCDGIPVSIGGRHPSVCKTCKIAVRGGKIKICGHLFCPSKYYHVRCLSTKQLKTYGQCWYCPSCICQVCFTDKDDDRIVLCDGCDHAYHVYCMKPPLNYIPTGKWFCIKCEPGILAIRQARKAYESKKGKIGPNDLKPNEDIDQKWNRKRGRETDTVGGMDMLINAANTLKFEENMNAIQIESERTLT* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0690 504 ProSitePatterns Zinc finger PHD-type signature. 223 267 IPR019786 -
Pvu1g0690 504 PANTHER D4, ISOFORM A 71 490 - -
Pvu1g0690 504 SUPERFAMILY FYVE/PHD zinc finger 200 269 IPR011011 -
Pvu1g0690 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 326 430 IPR013083 -
Pvu1g0690 504 Pfam PHD-finger 381 428 IPR019787 -
Pvu1g0690 504 Pfam PHD-finger 223 269 IPR019787 -
Pvu1g0690 504 SMART PHD_3 384 427 IPR001965 -
Pvu1g0690 504 SMART PHD_3 332 381 IPR001965 -
Pvu1g0690 504 SMART PHD_3 222 268 IPR001965 -
Pvu1g0690 504 ProSiteProfiles Zinc finger PHD-type profile. 379 429 IPR019787 -
Pvu1g0690 504 PANTHER HISTONE ACETYLTRANSFERASE 71 490 - -
Pvu1g0690 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 272 IPR013083 -
Pvu1g0690 504 ProSiteProfiles Zinc finger PHD-type profile. 220 270 IPR019787 -
Pvu1g0690 504 SUPERFAMILY FYVE/PHD zinc finger 381 432 IPR011011 -
Pvu1g0690 504 MobiDBLite consensus disorder prediction 444 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0690 Pvu-Chr1 8595350 8600839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0690 381 444 C2H2 Transcription Factor Family AT3G01460 51.562 1.40e-15 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pvu1g0690 PHD 7.9e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0690 - - pvu:PHAVU_001G067000g 1065.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0690 1 8595350 8600839 Pvu1g0690 1 8595350 8600839 ECH
Pvu1g0690 1 8595350 8600839 Pvu9g1351 9 19235530 19242975 PCT