Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0665 ATGGACAATTCTACTGCAGCTTCTGAGAACTTGCCCCATCATCGTGCTAATCACTGGAAGGAAGATGAGGATCAAAAGCTAATCCAACTTGTTCAACAACATGGTCCCCAACACTGGAATGCAATTGCTCAGCATATACATGGACGAACTGGGAAAAGTTGCAGATTAAGGTGGCGCAATCATCTTAGTCCTGAAGTTAACAGAAACCCTTTCTCGAAAGAAGAAGAAGAGAGGCTAATTGCAGCTCGCGAGTTTTATGGGTCAAAATGGGCAACCATAGCCAAACTCTTCTTCGGGAGAACCGATAATGCCTTGAAAAACCATTGGCACGTTTTGACCGCACGAAAGCGAAAGGAAGCCAACAATGGAAGTTTGCAAGAGCTGGTCAACGCTTCAAGCTCTTCCTCCCCCTGCAACATTCCTCGTCCTCATCATAACGCATTCTTTCACATGAGGAACTTCAACGCTGCACAAACTGCACCTGCACCAGTGTGTTCCAGTGCTTCGTTCAGCCCTGCCAACTTTGGATCAGTACCATCCTTCTCAGAATCTTTTCCTGCTGCTGCTGCTGCTGCTGCTGCTGGTGGTGGTGGAATGATGAAGAAGGGCTTGTTTCATGGCTCATCATCAGCTGAGTTTGAGGGTTCTTCTTCCTCGGAGAAAAACCAAGCACATGACGCTGGATTCAAAGATGCTACTTTCTATGATTTTCTTGGTGTCGGTGCTGATGATGATGAGTGA 741 0.4669 MDNSTAASENLPHHRANHWKEDEDQKLIQLVQQHGPQHWNAIAQHIHGRTGKSCRLRWRNHLSPEVNRNPFSKEEEERLIAAREFYGSKWATIAKLFFGRTDNALKNHWHVLTARKRKEANNGSLQELVNASSSSSPCNIPRPHHNAFFHMRNFNAAQTAPAPVCSSASFSPANFGSVPSFSESFPAAAAAAAAGGGGMMKKGLFHGSSSAEFEGSSSSEKNQAHDAGFKDATFYDFLGVGADDDE* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0665 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Pvu1g0665 246 Gene3D - 69 136 - -
Pvu1g0665 246 CDD SANT 70 112 IPR001005 -
Pvu1g0665 246 PANTHER MYB PROTEIN-RELATED 17 242 - -
Pvu1g0665 246 SMART sant 15 64 IPR001005 -
Pvu1g0665 246 SMART sant 67 115 IPR001005 -
Pvu1g0665 246 Gene3D - 17 67 - -
Pvu1g0665 246 Pfam Myb-like DNA-binding domain 19 79 - -
Pvu1g0665 246 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pvu1g0665 246 PANTHER OS08G0435700 PROTEIN 17 242 - -
Pvu1g0665 246 CDD SANT 19 62 IPR001005 -
Pvu1g0665 246 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 66 IPR017930 -
Pvu1g0665 246 ProSiteProfiles Myb-like domain profile. 11 62 IPR001005 -
Pvu1g0665 246 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0665 Pvu-Chr1 8116183 8118029 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0665 12 241 MYB Transcription Factor Family AT4G33450 35.366 6.17e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu1g0665 Myb_DNA-bind_6 7.2e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0665 K09422 - gmx:102660725 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0665 1 8116183 8118029 Pvu1g0665 1 8116183 8118029 ECH
Pvu9g1382 9 19679666 19680527 Pvu1g0665 1 8116183 8118029 PCT