Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0659 ATGTCTGCGACCGTTGGCCAGATAATCAAGTGCAGAGCTGCGATTGCATGGGAGGCAGGGAAGCCTCTGGTGATTGAAGAAGTAGAGGTGGCGCCACCCAAAGCCGGGGAGGTCCGTTTGAAGATCCTCTACACCTCCCTTTGCCACACCGATGTTTACTTTTGGGAAGCCAAGGGCCAGACTCCATTGTTTCCTCGTATTTTTGGCCATGAAGCTTCAGGTATTGTGGAGAGCATTGGGGAAGGTGTTACTCATTTGCAACCAGGAGACCATGCCCTGCCTGTGTTCACAGGAGAGTGTGGGGAATGCGTACATTGTAAGTCAGAAGAGAGCAACATGTGTGAGCTCCTCAGGATCAACACCGATAGGGGTGTCATGATCAATGATGGTCAATCAAGGTTCTCTAAGAATGGAAAACCCATATACCATTTCTTGGGAACCTCCACATTCAGTGAATACACAGTTGTCCACGCCGGATGTGTTGCAAAGATCAACCCAGCTGCTCCACTTGACAAATCCTGTGTTCTCAGTTGTGGAATTTGCACAGGATTTGGTGCTACTGTTAATGTTGCAAAACCAAAACCTGGTTCCTCTATTGCCATTTTCGGACTTGGAGCTGTTGGCCTTGCCGCTGCAGAAGGGGCAAGGGTTTCAGGTGCTTCACGAATCATTGGAATTGATTTAGTTTCATCCAGATTTGAAGAAGCTAAGAAGTTTGGGGTTAACGAGTTTGTGAATCCAAAGGATCACGATAAACCTATTCAACAGGTAATTGCTGAAATGACCAATGGAGGTGTGGATCGGGCTGTCGAATGTACTGGCAGCATCCAGGCTATGGTTTCAGCATTTGAATGTGTCCACGATGGTTGGGGTCTTGCTGTACTTGTTGGTGTGCCTAATAAAGATGATGCATTCAAAACTGCTCCTATTAATTTCCTGAATGAGAGGACTCTTAAAGGAACCTTTTATGGTAACTACAAACCACGCACTGATCTTCCTGCTGTTGTGGAAAAGTACATGAGCGGGGAGCTAGAAGTAGACAAATTCATCACTCACTCAGTTCCCTTCTCAGAGATCAACAAAGCCTTTGAATACATGCTGAAAGGACAGTCCATTAGGTGCATTATTCGCATGCAAGAGTAA 1143 0.4628 MSATVGQIIKCRAAIAWEAGKPLVIEEVEVAPPKAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEASGIVESIGEGVTHLQPGDHALPVFTGECGECVHCKSEESNMCELLRINTDRGVMINDGQSRFSKNGKPIYHFLGTSTFSEYTVVHAGCVAKINPAAPLDKSCVLSCGICTGFGATVNVAKPKPGSSIAIFGLGAVGLAAAEGARVSGASRIIGIDLVSSRFEEAKKFGVNEFVNPKDHDKPIQQVIAEMTNGGVDRAVECTGSIQAMVSAFECVHDGWGLAVLVGVPNKDDAFKTAPINFLNERTLKGTFYGNYKPRTDLPAVVEKYMSGELEVDKFITHSVPFSEINKAFEYMLKGQSIRCIIRMQE* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0659 380 Pfam Zinc-binding dehydrogenase 206 333 IPR013149 -
Pvu1g0659 380 CDD alcohol_DH_plants 9 377 - -
Pvu1g0659 380 Gene3D - 183 321 - -
Pvu1g0659 380 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 69 83 IPR002328 GO:0008270|GO:0016491
Pvu1g0659 380 Gene3D - 19 370 - -
Pvu1g0659 380 PANTHER ALCOHOL DEHYDROGENASE 4 378 - -
Pvu1g0659 380 PANTHER ALCOHOL DEHYDROGENASE-RELATED 4 378 - -
Pvu1g0659 380 SMART PKS_ER_names_mod 20 376 IPR020843 GO:0016491
Pvu1g0659 380 SUPERFAMILY GroES-like 4 186 IPR011032 -
Pvu1g0659 380 SUPERFAMILY GroES-like 329 377 IPR011032 -
Pvu1g0659 380 Pfam Alcohol dehydrogenase GroES-like domain 36 163 IPR013154 -
Pvu1g0659 380 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 169 343 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0659 Pvu-Chr1 7989513 7992498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0659 37 368 Monolignol Biosynthesis Gene Families AT1G72680 25.223 9.65e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0659 K18857 - gmx:100800668 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0659 1 7989513 7992498 Pvu1g0659 1 7989513 7992498 ECH
Pvu1g0659 1 7989513 7992498 Pvu9g1393 9 19841975 19845107 PCT