Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0655 ATGAGCACTGCACAACAAGAGAAGGTTGTTAGGTTTAGGGATTGGAATTTGGAGAAGAGTTCTGAGAGCAATTATTCTGAGATCAAAATTGCACACTCAGGGATATTTAGAACGACATTAAGTTCAGTTTCTGAGAAGTTTCAAAATGGATTGGAATCTGGTTCTGATAGGATAAAAAGCTTCAGAACATCATTCAAATCTTTTCCCTATAGTAGTGCTCTTTCTAGAAGTTTTAGTTCTAGAAAGAAAATACTTGATCCGCAGGGTCCATTCCTTCAAAGGTGGAACAAGATATTTGTATTATTATGTGTTATCGCAGTATCACTGGATCCTTTGTTCTTTTATGTCCCGGTTATTGATGATGAGAAAAAATGTCTTTCACTGGACAGTAAGATGGAGATTACAGCAACTGTCTTAAGATCTTTCTCTGATGCTTTTTATATAATCCACATGATTTTCCAATTTCGTACTGGATTCATTGCTCCCTCTTCTCGTGTATTTGGAAGAGGTGTTTTGGTTGAAGATTCTTGGGCAATAGCAAGGAGGTATCTATCATCATATTTCTTAGTTGACATTCTTGCTGTTCTTCCCCTCCCACAGGTGGTGATTCTAGTTATCATTCCAAAGATGAGTGGTTTTAAATCACTTAATACCAAGAACTTGCTGAAATTTGTTGTCTTCTTCCAATATGTGCCTCGTTTATTGCGGGTCATTCCATTATATAGAGAAGTTACAAGAGCCTCTGGCATTCTCACTGAAACTGCTTGGGCTGGAGCTGCATTTAATCTATTTCTTTACATGCTTGCAAGTCATGTTGTTGGTGCCTTTTGGTACTTGTTTTCTATAGAACGAGAAACCACATGTTGGCAAGAAGCCTGTCGAAGTAATACAACAGTGTGTAACAAGGCAGATATGTATTGTAATGATTATTGGGGTGGGCTGAGCAAAATTTCGACATTCCTGAATACTTCTTGCCCAATACAGAAGGAAGATAAAAATCTCTTTGATTTTGGAATGTTCCTTGATGCTCTTCAATCCGGTGTTGTGGAGTCAAGAGATTTTCCACAAAAATTCTTTTACTGCTTTTGGTGGGGCTTAAAAAATTTGAGTTCTCTTGGCCAGAACCTGGGAACAAGTACCTATGTTTGGGAAATATGCTTTGCAGTTTTCATTTCTGTATCTGGTTTGGTGTTATTTTCATTCCTCATTGGAAATATGCAGACATATTTGCAGTCAACAACCACAAGATTGGAGGAGATGAGAGTGAAGAGGAGGGATGCAGAACAGTGGATGTCTCACCGATTGCTTCCTGATGGCCTGAGAGTGCGAATCAGACGATATGAGCAGTACAAATGGCAAGAAACCAGAGGCGTAGATGAAGACAATTTGGTTCGTAATCTTCCCAAGGATTTAAGAAGAGACATTAAGCGACATCTTTGTTTGGCTTTGCTAATGAGAGTGCCAATGTTTGAGAAAATGGATGAACAACTTCTGGATGCAATGTGTGACCGTCTGAAGCCGGTGCTGTTCACTGAAGAAAGCTACATTGTGAGGGAAGGAGACCCAGTTGATGAGATGCTGTTCATAATGCGTGGGAAGTTACTGACCATAACAACTAACGGTGGAAGAACCGGTTTCTTCAACTCGGAGTATCTGAAAGCTGGTGACTTCTGTGGAGAGGAGCTTCTGACGTGGGCCTTGGATCCCCATTCCTCATCCAACCTTCCCACCTCAACCAGAACAGTCCAAACTCTTTCAGAAGTGGAAGCCTTCGCCCTCAAAGCCGATGACTTGAAGTTCGTGGCATCACAGTTTCGGCGCCTTCACAGTAAGCAGCTACGCCACACTTTCCGGTTCTACTCGCAACAATGGCGGTCGTGGGCTGCGTGCTTCATCCAAGCTGCATGGCGGCGATACAGTAAGAGGAAGCTTGAAGAATCCCTGGTTGAAGACGAGAATAGACTGCAAAATGTGTTGGCTAAATCAGGTGGAAGCTCACCTAGCCTTGGTGCTACAATATATGCTTCAAGGTTTGCTGCAAATGCACTTACATTGCTACGCCGTAATGGTGCAAAGAAGGGTAGGGTGGCAGAGAGATTACCCCCCATGCTTTTTCAGAAGCCTGCAGAACCTGATTTTACTGCGGATGAAGAATAA 2157 0.4196 MSTAQQEKVVRFRDWNLEKSSESNYSEIKIAHSGIFRTTLSSVSEKFQNGLESGSDRIKSFRTSFKSFPYSSALSRSFSSRKKILDPQGPFLQRWNKIFVLLCVIAVSLDPLFFYVPVIDDEKKCLSLDSKMEITATVLRSFSDAFYIIHMIFQFRTGFIAPSSRVFGRGVLVEDSWAIARRYLSSYFLVDILAVLPLPQVVILVIIPKMSGFKSLNTKNLLKFVVFFQYVPRLLRVIPLYREVTRASGILTETAWAGAAFNLFLYMLASHVVGAFWYLFSIERETTCWQEACRSNTTVCNKADMYCNDYWGGLSKISTFLNTSCPIQKEDKNLFDFGMFLDALQSGVVESRDFPQKFFYCFWWGLKNLSSLGQNLGTSTYVWEICFAVFISVSGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDGLRVRIRRYEQYKWQETRGVDEDNLVRNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPVLFTEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSSNLPTSTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRSWAACFIQAAWRRYSKRKLEESLVEDENRLQNVLAKSGGSSPSLGATIYASRFAANALTLLRRNGAKKGRVAERLPPMLFQKPAEPDFTADEE* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0655 718 Gene3D Helix hairpin bin 415 480 - -
Pvu1g0655 718 ProSiteProfiles cAMP/cGMP binding motif profile. 489 573 IPR000595 -
Pvu1g0655 718 SMART cnmp_10 489 620 IPR000595 -
Pvu1g0655 718 Coils Coil 641 661 - -
Pvu1g0655 718 SUPERFAMILY Voltage-gated potassium channels 86 411 - -
Pvu1g0655 718 Gene3D - 95 413 - -
Pvu1g0655 718 SUPERFAMILY cAMP-binding domain-like 418 611 IPR018490 -
Pvu1g0655 718 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 716 - -
Pvu1g0655 718 Pfam Cyclic nucleotide-binding domain 510 600 IPR000595 -
Pvu1g0655 718 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 7 716 - -
Pvu1g0655 718 Gene3D Jelly Rolls 487 607 IPR014710 -
Pvu1g0655 718 Pfam Ion transport protein 94 416 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pvu1g0655 718 CDD CAP_ED 489 620 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0655 Pvu-Chr1 7936453 7943857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0655 5 717 Ion Channels AT5G53130 77.654 0.0 1144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0655 K05391 - gmx:100801032 1317.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0655 1 7936453 7943857 Pvu1g0655 1 7936453 7943857 ECH