Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0629 ATGGACGGTGAACGGAGCATGCCTGCTCCATCTTATGGACAAGTTGACGGGGCTCAGAAAGTTAAAGCATTACATGGGAGGACCACTGGCCCTACAAGGCGTTCTACAAAAGGGCAATGGACATTAGAGGAGGATGATATCTTACGGACGGCGGTTGAGAAATTTAAGGGAAAGAATTGGAAAAAAATTGCCGAGTGTTTCAAGGAAAGGACTGATGTGCAATGCCTGCATCGGTGGCAGAAAGTTTTAAATCCTGAACTTGTTAAAGGTCCATGGTCTAAAGAGGAAGATGACATAATTATTGAATTGGTGAATAAAAATGGGGCTAAAAAGTGGTCATCTCTTGCACGACATTTACCTGGACGTATTGGTAAGCAATGTCGAGAAAGGTGGGTTAATCATCTTGATCCTACTATAAAAAAGGAGGCATGGACTCAGGAAGAGGAGTTGGCTCTAATACATTATCATCAGATATATGGGAACAAATGGGCCGAGTTGTCAAAGTACATTCCTGGAAGGACAGACAATGCTATTAAAAATCACTGGAACAGTTCTGTGAAAAAGAAATTGGATTCTTATTTGACATCTGGTGTGCTTAATCAGTTTGAGCCTGTACCTCATGTTGGAAATTCAAATCAATCAACAAGGTTGCAATGTAGTGGTGATGATAATTGTTCCAAGAGGATGGAAGGAGAAGAAGTTTCAGAGTCCAGCCAAGGTTCAGCTAATGCTGTTCGCTTTCCATCTGCTAGAGGGATGGGCAGTGCTGAATTACAAACTGGAGAGCCGGTGTGTAGGCCAAATGAAGAATGTAATCTCAGAAAGGATCATAGTCCAAGTCGAGCATCTTGTTCAGAGCCATATTATGTATCAATTGATGATATATGCATTCCTGAAATTTCTCACCAAGAGGCATGCACTTCTCAGTTCACTGAGCAACACTCACATGAACCTGGAAATTCCATAAGTGGGGATTGTCATTTCAATTTACATTCCTTACCCAATATTTCATCAATGGTCTTGGGGCAGGATTCCTCGCAGTTGCAAAGAGATTGTGTAGCTTCTAGTGAAATCTGTGACATGGTGAATGCTCCATTTCAGACTTCAGAGGGGTTGGGTGTTTCAACGTCCATGGGACCTGCATCTTTGGATTCTCTTAAACCAGAGCATGTGTTGATATCTGATGATGAATGTTGCAGAGTTCTATTTTCAGATTCAATGAATGATGGGTGTTTCCCCCCTGTAGATTATATTAAAGGTGAAGATACAGTTGAATTTTCTGGATGTACTTCATTTCCTTGCCAATCTTGTAATATCCAGATGGCTGAAACTGGTGGAACCTCAACTCCTCAGTTAACTTGTCCTCGTTGTTCTAATAATTATCAAGGAACTTCGTCCTCCCTGTCTTTCCCTCCAGTACTTTCTGCTTGTGATGATAGGGAGGGACCAACTGCTAATGGCAATCATTTATTTGGAACAAATGGTCACCAGTTGGTCTCCAGAGCACCTGCTAACTTCACTTATGTCAATTACGTATCCAGTTCTCCCTGTGTGGATGACATGGGTACAGCAGTAATGGAAGAAGCACGTGATATTCTGAATGGTACTTCAGAGGAAAAGACAAATGTGCATACAGAAAAGGAGGACTCTGGATCTCTATGTTATGAACCTCCCCGTTTTCCAAGTTTGGATATTCCTTTCTTCAGCTGTGATCTTGTACAGTCTGGGGTTGATATGCAGCAAGAGTTTAGTCCCTTGGGTATCCGCCAGTTTATGATGTCTTCTATGAATTGTCTTACTCCTTTCAGGTTGTGGGACTCACCCTCTCATGGTGATAGTCCAGATGCATTGTTAAAAAGTGCAGCTAAAACTTTTACAGGTACACCATCTATATTAAAGAAACGACACCGAGATTTATTGTCACCACTCTCAGATAAAAGAATTGATAAGAAACTTGAGACTGACATGACTACCAAAAACATTTCCAGTTTGGATGTCATGTTTGGTGACAATGAGACTCAAGAAGCAGATATGCCTTCATTTAAAAAACAGAGCAGCAGTGCATGTGTTGATGATAATAAAGAAAATTGCGGACAAGCTTATAAGCCAATTAAATATGCAATTTTTGATGAAAAGAACTCCCTCAAAGACACTGTAGACAATTCAAAGTCTAATGTAAAGCAACAGCAACTAAAGATTGAAGCATCAGCTGCTGCGATGGAACAAGAACCTTCTGGTGTTTTGGTTGAACATGATGTGAATGACCTGACGCTGTCTTCTCCTGATCAAGTTGGTTTAAAATCAAACAGAGGTCTAGGTTCAAGTACTAAATCACCCAAAAGCATGAACAGGTCCTTGGAAGCAGTTCCAAATCAGAACAGCCATTTGAAATTATCTTCAAAAATTCCACGCTCAAGGATTAATTCTAGTTCTCCTTGTGTTCGTGCAAAGGAGCATGAAAAACTTTCGGTTGCTGTTACTCGTGTACAAGCTCCAGGGGACAATTCAGGGGAACAAACTAGAAAGGATGGTGGTTTTGAAGCATGTAGCATATTCGGTGGAACACCTTTTAGGAAAGGCCTTGAATCACCTTCAGCATGGAAATCTCCTTGGTTCTTCAACACTTTTTTATGTAGCCCCAGACTTGGTACTGAAATTACAGTTGAGGATTTTGGGTATTTAATGAGCCCAGGTGATAGAAGCTATGATGCAATCGGGTTGTTAAAACAGATCAGTGAGCAAACTGCTGCTACATATGCCAATGCTAAAGAGGTTTTGGGAAATGAAACTCCTAAGGCAGCATCACGGAAAGATGCATCTGGAAACGAGGAGGATAAGTACCATGGTTCCCCCAATCAGCCTGGGAACGATTCTCAATTGGCTTCAAATGCATTGATAGAGCGACGCACACTTGACTTTAGCGAGTGTGGATCACCAAGCAAGGTTGATGACAACAAATCATCAGCTATAAGTTTCCCAAGCCCTTCTTCTTATCTGTTGAAAGGTTGTAGATGA 3015 0.4129 MDGERSMPAPSYGQVDGAQKVKALHGRTTGPTRRSTKGQWTLEEDDILRTAVEKFKGKNWKKIAECFKERTDVQCLHRWQKVLNPELVKGPWSKEEDDIIIELVNKNGAKKWSSLARHLPGRIGKQCRERWVNHLDPTIKKEAWTQEEELALIHYHQIYGNKWAELSKYIPGRTDNAIKNHWNSSVKKKLDSYLTSGVLNQFEPVPHVGNSNQSTRLQCSGDDNCSKRMEGEEVSESSQGSANAVRFPSARGMGSAELQTGEPVCRPNEECNLRKDHSPSRASCSEPYYVSIDDICIPEISHQEACTSQFTEQHSHEPGNSISGDCHFNLHSLPNISSMVLGQDSSQLQRDCVASSEICDMVNAPFQTSEGLGVSTSMGPASLDSLKPEHVLISDDECCRVLFSDSMNDGCFPPVDYIKGEDTVEFSGCTSFPCQSCNIQMAETGGTSTPQLTCPRCSNNYQGTSSSLSFPPVLSACDDREGPTANGNHLFGTNGHQLVSRAPANFTYVNYVSSSPCVDDMGTAVMEEARDILNGTSEEKTNVHTEKEDSGSLCYEPPRFPSLDIPFFSCDLVQSGVDMQQEFSPLGIRQFMMSSMNCLTPFRLWDSPSHGDSPDALLKSAAKTFTGTPSILKKRHRDLLSPLSDKRIDKKLETDMTTKNISSLDVMFGDNETQEADMPSFKKQSSSACVDDNKENCGQAYKPIKYAIFDEKNSLKDTVDNSKSNVKQQQLKIEASAAAMEQEPSGVLVEHDVNDLTLSSPDQVGLKSNRGLGSSTKSPKSMNRSLEAVPNQNSHLKLSSKIPRSRINSSSPCVRAKEHEKLSVAVTRVQAPGDNSGEQTRKDGGFEACSIFGGTPFRKGLESPSAWKSPWFFNTFLCSPRLGTEITVEDFGYLMSPGDRSYDAIGLLKQISEQTAATYANAKEVLGNETPKAASRKDASGNEEDKYHGSPNQPGNDSQLASNALIERRTLDFSECGSPSKVDDNKSSAISFPSPSSYLLKGCR* 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0629 1004 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Pvu1g0629 1004 MobiDBLite consensus disorder prediction 758 812 - -
Pvu1g0629 1004 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Pvu1g0629 1004 PANTHER MYB PROTEIN-RELATED 4 1003 - -
Pvu1g0629 1004 SUPERFAMILY Homeodomain-like 35 98 IPR009057 -
Pvu1g0629 1004 MobiDBLite consensus disorder prediction 1 38 - -
Pvu1g0629 1004 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Pvu1g0629 1004 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Pvu1g0629 1004 CDD SANT 143 183 IPR001005 -
Pvu1g0629 1004 PANTHER TRANSCRIPTION REPRESSOR MYB5 4 1003 - -
Pvu1g0629 1004 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Pvu1g0629 1004 SMART sant 36 85 IPR001005 -
Pvu1g0629 1004 SMART sant 88 137 IPR001005 -
Pvu1g0629 1004 SMART sant 140 188 IPR001005 -
Pvu1g0629 1004 MobiDBLite consensus disorder prediction 946 965 - -
Pvu1g0629 1004 Gene3D - 89 140 - -
Pvu1g0629 1004 Pfam Myb-like DNA-binding domain 89 135 IPR001005 -
Pvu1g0629 1004 Pfam Myb-like DNA-binding domain 37 83 IPR001005 -
Pvu1g0629 1004 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Pvu1g0629 1004 MobiDBLite consensus disorder prediction 980 995 - -
Pvu1g0629 1004 CDD SANT 40 83 IPR001005 -
Pvu1g0629 1004 Gene3D - 36 88 - -
Pvu1g0629 1004 Coils Coil 712 732 - -
Pvu1g0629 1004 MobiDBLite consensus disorder prediction 928 1004 - -
Pvu1g0629 1004 Gene3D - 142 202 - -
Pvu1g0629 1004 MobiDBLite consensus disorder prediction 205 222 - -
Pvu1g0629 1004 MobiDBLite consensus disorder prediction 758 814 - -
Pvu1g0629 1004 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Pvu1g0629 1004 CDD SANT 91 135 IPR001005 -
Pvu1g0629 1004 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Pvu1g0629 1004 MobiDBLite consensus disorder prediction 205 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0629 Pvu-Chr1 7489629 7498373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0629 4 1004 MYB Transcription Factor Family AT4G32730 41.255 0.0 640
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu1g0629 Myb_DNA-binding 1.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0629 - K09420 gmx:100794559 1565.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0629 1 7489629 7498373 Pvu1g0629 1 7489629 7498373 ECH
Pvu1g0629 1 7489629 7498373 Pvu9g1093 9 16052235 16059202 PCT