Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0615 ATGCAAAAAGACAAAGAAGTTGTCAGCAAAGAGGGTGAAGACATTGAAATGGAAGGGACTCGTGATGAGAAGAAGAAGGAGGAAACCCTACCACCTGGATTTCGGTTTCACCCCACCGATGAAGAACTCATTTCTTACTACCTCACAAACAAGATTTCAGATTCTAATTTCACAGGAAAAGCCATAGCTGTTGTAGATCTCAACAAATGTGAGCCATGGGATCTTCCGGGGAAGGCGAAGATGGGGCAAAAAGAATGGTACTTCTTCAACCTAAGGGATCGTAAATATCCGACAGGTGTGAGAACGAACAGAGCAACGAACACAGGGTACTGGAAAACCACTGGAAAAGACAAGGAAATCTTGAACAGTGTTACATCGGAGTTGGTTGGAATGAAGAAGACTTTGGTTTTCTACAAAGGTAGGGCTCCCAGAGGAGAGAAAACCAACTGGGTCATGCATGAATATCGCATTCATTCAAAATCCACCTTCAAAATCGATAAGCAAGATGAATGGGTGGTTTGCCGAGTGTTCCGGAAGAGTGGCGGAGCAAGAAAGTTCCCATCAAATTCCAACCACACCAACACCAGAACACTCAATCCTTACAGTGTGGAAGTTGGCCCTAGCATTGTGCCACCCCCAATGATGCACCTGGGAGATCCTTCTGCTCATTTCAATTTTCCTTATGGATCAAGAAACCCTTCAGAGCTCTTGAGAGGTGGTGGATCCACAAGTGCCAATGTCATGAACCTCCCAACAATGCACCCCCATTTCAACAATCCAGCAGCAGCAGGAGCAGAAACAGCAGGTTTCACCATTTCTGGCCTTAATTTGAACCTGGGAGGTGCCACCACACAAACACAACCCTTTTTGAGGCCAATGATGCCACCACCACACCCACTTTCTGTGGCCCAACTCAACCATGATTTCAGTTCCAACATGGTGACACACACTGCTCTTGCTGCTCACAATGTAGGGTATGGTGCAGACATGGCCAATGCAAATTCTCACGGCAATAGGTACATGGCCATGGACCACTGCATGGATCTAGACAATTACTGGCCTTCCTACTAA 1071 0.4631 MQKDKEVVSKEGEDIEMEGTRDEKKKEETLPPGFRFHPTDEELISYYLTNKISDSNFTGKAIAVVDLNKCEPWDLPGKAKMGQKEWYFFNLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSVTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRIHSKSTFKIDKQDEWVVCRVFRKSGGARKFPSNSNHTNTRTLNPYSVEVGPSIVPPPMMHLGDPSAHFNFPYGSRNPSELLRGGGSTSANVMNLPTMHPHFNNPAAAGAETAGFTISGLNLNLGGATTQTQPFLRPMMPPPHPLSVAQLNHDFSSNMVTHTALAAHNVGYGADMANANSHGNRYMAMDHCMDLDNYWPSY* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0615 356 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 353 - -
Pvu1g0615 356 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 17 353 - -
Pvu1g0615 356 SUPERFAMILY NAC domain 26 179 IPR036093 GO:0003677|GO:0006355
Pvu1g0615 356 Gene3D NAC domain 39 182 IPR036093 GO:0003677|GO:0006355
Pvu1g0615 356 ProSiteProfiles NAC domain profile. 30 179 IPR003441 GO:0003677|GO:0006355
Pvu1g0615 356 MobiDBLite consensus disorder prediction 1 34 - -
Pvu1g0615 356 Pfam No apical meristem (NAM) protein 31 157 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0615 Pvu-Chr1 7192292 7195412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0615 15 356 NAC Transcription Factor Family AT2G24430 50.556 2.49e-110 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pvu1g0615 NAM 4.4e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0615 - - pvu:PHAVU_001G059900g 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0615 1 7192292 7195412 Pvu9g1070 9 15742889 15745067 PCT