Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0609 ATGGAAGAGTATTCTGGTCGAAGAGGCGTGGATGGGGTGGTAGTCCCTAGAAAGGGGATGAGCCATGTACTTAGAGATACTGCTAATACTAGAGAACGAACAGGTCAAGTTTGCAGCAAATTGAGTTGCAGTAGTAGAGCCAATACTCCCAAAGTTTCTCAAGTCAGATCTTCTGAAAAGGGTAAATCTCCGAGGCCTTTATCCCAGTCCTCTTCAAGTAGCAAGGAACCAATTAGAAGTTCCTCTAGATCTACTAGTAACCCAGAAAAACGAATTATGGAACCTCGGAAAATATTATCCTCTCAGTTTGAGGCAGATTCATCTGAAAGTAGTAGTGTACAGGATGAACCAGAATTTTCAGAGCTCATTCCTCCAGCAGAAGAAAATCAGAGAGGGCCTAAATCCAGGGGGGGAAGTTCAGAGTCTAGTTATGCGAGTCTGATGGAAGTAGGAAGCTCCAGTACAGTATCAAATACTAGATCTCCAAGGAATTTAAATCAAAGACCTGGACTTCGTGGACAAGAAATCAAAAGCAGTGGTCCAGTGAGACATGCTGTTTCAAGCAGTTATGGATTGAGGAACATCAGATGCAACACTATATCTGATAGCACCCAACCTGGTTGTTCATCATCAGATTCAAGTCTTAATAGAAGGAAGGATACAATAAAAAAGAGAAACTGTGAAGGGGAAAGTAGTTCCACTGTCAGAGGGAAGAATATCACTGGGTCTTCACTGGAAGGACGGAATTCTGGCTCCAGAAATGGCATATCTATATCTGATTCAGGAAGAACAAGAAATACACCCTCTCACCGGAATACCAGTATGACACCAGTAAGAACTCAAAGATCAGCTAGTGGTCATGCCAGGGGAAGGTTTTATAGCCAAGGAAATGAAAATCCTTTGGCAACCAGAGAGTTCCCTCATTCTGGTGATGTTAATCCTCATGGCATTTCGTGTCATATTTCTATGGAGACTCCTTTAACATGCTCAAGCTCTAGTGGTAGACCAAGCAATAGCAGTGAGCAGTTACCTTGTGTCACGCCTCTGTCTCCTGAAGATGACATCATTCATTCTCTAATAAATGATGGGGACGGCTATCGACATTACAGTATGGACAGTATTGATGGGATATTATTGGCCCTTGAGAGGATTCAACAAGGTCGAGAGCTAACCCATGAGCAAATTCTTTCGTTTGGGACCAACTTGTTCGATAATGGATTAAACTTTTATGACCACCACAGAGACATGCGGTTGGATATTGATGACATGTCCTATGAGGAACTCTTAGCTCTAGAAGAGAGGATGGGAACTGTGAGCACAGCTCTATCGGAGGAAGCACTTGCAGAATCTCTTAAAAGAAGTATATATCAGTCTCCACCTACACATGATACAGACGAGAACTGTAATGAGGATAAGGATGACATCAAATGCTGCATTTGCCAGGAGGAATATGTTATTGGTGATGAACTTGGGGACCTGCCATGCAAGCATAGGTTTCATGTGGTTTGCATAGAGGAGTGGATGGGGCTGAAGAACTGGTGCCCTATTTGTAAATTATCTGCAGCACTGTCTAATAATTCATCTTCACCTCATTGA 1596 0.4273 MEEYSGRRGVDGVVVPRKGMSHVLRDTANTRERTGQVCSKLSCSSRANTPKVSQVRSSEKGKSPRPLSQSSSSSKEPIRSSSRSTSNPEKRIMEPRKILSSQFEADSSESSSVQDEPEFSELIPPAEENQRGPKSRGGSSESSYASLMEVGSSSTVSNTRSPRNLNQRPGLRGQEIKSSGPVRHAVSSSYGLRNIRCNTISDSTQPGCSSSDSSLNRRKDTIKKRNCEGESSSTVRGKNITGSSLEGRNSGSRNGISISDSGRTRNTPSHRNTSMTPVRTQRSASGHARGRFYSQGNENPLATREFPHSGDVNPHGISCHISMETPLTCSSSSGRPSNSSEQLPCVTPLSPEDDIIHSLINDGDGYRHYSMDSIDGILLALERIQQGRELTHEQILSFGTNLFDNGLNFYDHHRDMRLDIDDMSYEELLALEERMGTVSTALSEEALAESLKRSIYQSPPTHDTDENCNEDKDDIKCCICQEEYVIGDELGDLPCKHRFHVVCIEEWMGLKNWCPICKLSAALSNNSSSPH* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0609 531 MobiDBLite consensus disorder prediction 1 185 - -
Pvu1g0609 531 Pfam Ring finger domain 476 518 IPR001841 -
Pvu1g0609 531 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 522 - -
Pvu1g0609 531 MobiDBLite consensus disorder prediction 216 231 - -
Pvu1g0609 531 MobiDBLite consensus disorder prediction 327 346 - -
Pvu1g0609 531 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 439 522 IPR013083 -
Pvu1g0609 531 MobiDBLite consensus disorder prediction 198 310 - -
Pvu1g0609 531 SMART ring_2 477 517 IPR001841 -
Pvu1g0609 531 MobiDBLite consensus disorder prediction 30 88 - -
Pvu1g0609 531 MobiDBLite consensus disorder prediction 327 348 - -
Pvu1g0609 531 SUPERFAMILY RING/U-box 471 521 - -
Pvu1g0609 531 MobiDBLite consensus disorder prediction 133 173 - -
Pvu1g0609 531 ProSiteProfiles Zinc finger RING-type profile. 477 518 IPR001841 -
Pvu1g0609 531 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 522 IPR045191 GO:0061630
Pvu1g0609 531 MobiDBLite consensus disorder prediction 198 215 - -
Pvu1g0609 531 MobiDBLite consensus disorder prediction 101 117 - -
Pvu1g0609 531 MobiDBLite consensus disorder prediction 232 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0609 Pvu-Chr1 7069836 7072476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0609 352 521 C3H Transcription Factor Family AT2G15530 42.135 3.04e-36 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0609 - - var:108336181 818.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0609 1 7069836 7072476 Pvu1g0609 1 7069836 7072476 ECH
Pvu1g0609 1 7069836 7072476 Pvu9g1038 9 15421014 15425860 PCT