Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0604 ATGCCAGGGTTAACGTGCAACGCTTGTAACGCGGAATTCAAGGATGACACAGAGCAAAAGCTCCATTACAAGTCCGAGTGGCATCGCTACAATCTCAAGCGCAAGGTGGCTGGGGTTCCTGGGGTGACAGAAGCACTATTTCTGGCCAGGCAGTCTGTTATTGCTCAAGAGAAAAATAAATTGAGTGAGACACCCATGCTCTATAGCTGTGGTCTTTGTGGAAAAGATTATAAAAGTTATAAAGCTCATGCTGAGCACCTTAAATCACGTGGTCATATGATGCGGGCCTCTGAAGGAACTAGTGGTGCTGATGAGAAGGCAATAATTAAGCCACTTCCACAACGTGTTGTGAATAGGCCTCCTCCTAGAAGAGAGGTGGATAACTCTGAAACTGAAGAAAGTGAAGATGAATGGGAGGAGGTTGATCCGGAAGATGATTTGGTCGATGGGGCTGCGAAGTCTTTGACTGATTTGAATGTGAATGGGCATGGTGAAAATGTTGATATGGATGAAGATGAAGATGACAATGATGAGGATGACTTTGAGGAGTTAGATCCCTCATGTTGCTTTATGTGTGATCAAAAACACAAAACAATTGAAGACTGCATAGTTCACATGCACAAGCATCACGGATTCTTCATTCCAGATGTTGAGTATTTGAAGGATCCAAAAGGCCTCCTCACATATCTTGGCCTTAAGGTCAAGAGGGACTACGAGTGTCTGTACTGCAATGAACGACGTTATCCTTTCAGCAGCTTGGAAGCAGTCAGGAAACATATGGCAGCAAAAAGCCATTGTAAAGTGCATTTTGGTGATGGTAATGAGGAGGAGGAGGTAGAGTTAGAAGAGTTCTATGACTACAGCAGCAGTTATACGGATGATCAGGGCAAGCAGCTCATTGTGTCTGGTGAAACAGCTAACAATGTAGAACTTGTTGGTGGGTCTGAGCTCATAATCACCAAGAAATCTGGTGATAAAATTTCAACCAGAACACTTGGTTCCCGTGAATTTTTGCGTTATTATCGTCAGAAGCCCCGGCCATCACCAAATAATATGGCCATTACTGCTGCATTAGCTTCAAGGTACAGGAGCATGGGTTTGACCACTGTCCAATCAAGGGAGCAAATTGTGAGGATGAAAGTGCTGAAGGAAATGAGTAGGTCCGGTGTGGAGAATATGCGTTCCAAGATAGCAATGAAGAGTAATGTTATCCGAAACCTGCCGAGTAATGTCCCATATTAG 1242 0.4404 MPGLTCNACNAEFKDDTEQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQSVIAQEKNKLSETPMLYSCGLCGKDYKSYKAHAEHLKSRGHMMRASEGTSGADEKAIIKPLPQRVVNRPPPRREVDNSETEESEDEWEEVDPEDDLVDGAAKSLTDLNVNGHGENVDMDEDEDDNDEDDFEELDPSCCFMCDQKHKTIEDCIVHMHKHHGFFIPDVEYLKDPKGLLTYLGLKVKRDYECLYCNERRYPFSSLEAVRKHMAAKSHCKVHFGDGNEEEEVELEEFYDYSSSYTDDQGKQLIVSGETANNVELVGGSELIITKKSGDKISTRTLGSREFLRYYRQKPRPSPNNMAITAALASRYRSMGLTTVQSREQIVRMKVLKEMSRSGVENMRSKIAMKSNVIRNLPSNVPY* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0604 413 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Pvu1g0604 413 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Pvu1g0604 413 MobiDBLite consensus disorder prediction 130 146 - -
Pvu1g0604 413 SUPERFAMILY beta-beta-alpha zinc fingers 172 235 IPR036236 -
Pvu1g0604 413 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Pvu1g0604 413 SMART c2h2final6 187 209 IPR013087 -
Pvu1g0604 413 SMART c2h2final6 4 28 IPR013087 -
Pvu1g0604 413 SMART c2h2final6 68 92 IPR013087 -
Pvu1g0604 413 SMART c2h2final6 238 265 IPR013087 -
Pvu1g0604 413 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
Pvu1g0604 413 PANTHER ZINC FINGER PROTEIN-RELATED 1 413 - -
Pvu1g0604 413 Pfam C2H2 type zinc-finger (2 copies) 189 291 IPR041661 -
Pvu1g0604 413 MobiDBLite consensus disorder prediction 115 180 - -
Pvu1g0604 413 PANTHER ZINC FINGER PROTEIN 622 1 413 IPR040025 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0604 1 413 C2H2 Transcription Factor Family AT4G31420 65.550 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu1g0604 zf-C2H2_2 6.7e-26 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0604 K14816 - gmx:100809681 702.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0604 1 6954135 6957152 Pvu1g0604 1 6954135 6957152 ECH