Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu1g0601 | ATGTTCTCCAGCTCCCAATTCGATGCAGCCACAGCCTTCTCCGGCGGTGGATTCATGTCCTCTCAGCCGTCTAACCTCAACGATTCCTCTCCCGCACCGTCAAAAAGCCGCGAAACTCAGGGTTTGGTGCCGGTGACGGTGAAGCAGATAAGTGAAGCCTCTCAAACCGGTGACGAAAAGTCGAATTTCGTGATCAATGGTGTAGATCTGAACAATGTAACACTAGTCGGGATGGTGTTTGAGAAAGTTGAGCGAAACACCGATGTCAATTTTGTTTTGGACGATGGAACTGGACGAATAAAATGCCGAAGATGGGTTAATGAGACTTTTGACACAAAGGAAATGGAGGAAGTAATGAATGGTATGTACGTTCGTGTTTTTGGGCATTTGAAAAGCTTCCAAGGTGTTAGGCAACTTGTTGCTTTCTCTGTCAGGCCGGTTACCAATTTTGATGAGATCCCTTTTCACTTTATTGATAGCATATATTACCATCTTCGCTCCAAAATGAAGTTGGAAGGAATCACTTCTACAAATCCTTTATACGTCTCGTCTTTTAACACTCCTGTCAAAAATGCCCCAAATGGATCTCAGGCGCCACCATCAAATCCAGCATATGCACAATATAGCGTGGATGGACTTAAGGATTGCGATAAATTGATTATTGACTACCTGAAGCAGCATTCAGATATCTCAGATGAATTTGGAAAACATGTCAATGAATTATCCCGAGAGCTCAAGCTTCCAATGGATAGGATCATGTTGTCGCTAAAGACTCTTGTAGACGATGGTTTAGTATACTCCACCATTGATGACTACCATTACAAACAAGTTTGA | 834 | 0.4293 | MFSSSQFDAATAFSGGGFMSSQPSNLNDSSPAPSKSRETQGLVPVTVKQISEASQTGDEKSNFVINGVDLNNVTLVGMVFEKVERNTDVNFVLDDGTGRIKCRRWVNETFDTKEMEEVMNGMYVRVFGHLKSFQGVRQLVAFSVRPVTNFDEIPFHFIDSIYYHLRSKMKLEGITSTNPLYVSSFNTPVKNAPNGSQAPPSNPAYAQYSVDGLKDCDKLIIDYLKQHSDISDEFGKHVNELSRELKLPMDRIMLSLKTLVDDGLVYSTIDDYHYKQV* | 278 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu1g0601 | 277 | PIRSF | RPA32 | 1 | 277 | IPR014646 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Pvu1g0601 | 277 | Gene3D | - | 38 | 169 | IPR012340 | - | |
Pvu1g0601 | 277 | Pfam | OB-fold nucleic acid binding domain | 73 | 145 | IPR004365 | GO:0003676 | |
Pvu1g0601 | 277 | PANTHER | REPLICATION PROTEIN A 32 KDA SUBUNIT A | 1 | 277 | - | - | |
Pvu1g0601 | 277 | SUPERFAMILY | Nucleic acid-binding proteins | 42 | 166 | IPR012340 | - | |
Pvu1g0601 | 277 | CDD | RPA2_DBD_D | 72 | 165 | - | - | |
Pvu1g0601 | 277 | Pfam | Replication protein A C terminal | 191 | 271 | IPR014892 | - | |
Pvu1g0601 | 277 | PANTHER | REPLICATION PROTEIN A-RELATED | 1 | 277 | IPR040260 | - | |
Pvu1g0601 | 277 | MobiDBLite | consensus disorder prediction | 15 | 43 | - | - | |
Pvu1g0601 | 277 | Gene3D | - | 207 | 277 | IPR036388 | - | |
Pvu1g0601 | 277 | SUPERFAMILY | "Winged helix" DNA-binding domain | 211 | 277 | IPR036390 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu1g0601 | Pvu-Chr1 | 6900093 | 6904416 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu1g0601 | 1 | 277 | Core DNA Replication Machinery Family | AT2G24490 | 49.110 | 1.05e-92 | 273 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu1g0601 | K10739 | - | gmx:100802512 | 465.692 |