Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0583 ATGGGAGAGGTGGCAGTAATGCGCTCTGAGCCTCTGCAATTCGACTGCAATGACATTAAAGACATGACTGAGAAGGAAATGTACCCTCCAGAATCAAATGCAGAAGACTTGCATGGAGAAGAATCATGTCAATCAACAGACCCCAAAAATATCAATGAATTGCGAGATAAGGGATATATGGAGTATGGTTGTCAACATTACCGGAGAAGATGCCGAATCAGGTCCCCCTGTTGTAATGAGATTTTTGATTGCCGCCATTGTCACAATGAAGCAAAAAATGATATCAACATTGATCAGAAGGATAGACATGACATTCCCCGGCACCAAGTCAAACAGGTGATTTGTTCACTTTGTGGGACAGAACAAGAGGTTCAGCAGAACTGTATAAATTGTGGTGTTTGTATGGGCAAGTACTTCTGTGGAACATGCAAGCTTTTTGATGATGATATATCTAAGCAGCAGTACCATTGCAGTGGCTGTGGAATTTGCAGAACTGGAGGAAGCGAAAATTTCTTCCATTGCTACAAGTGTGGTTGTTGCTACTCGACTCTGCTGAAAAACAGTCACCCTTGTGTAGAAAGAGCAATGCATCATGATTGCCCTGTTTGTTTTGAATATTTATTTGAATCAAGAAATGATGTCACTGTTATGCCATGCGGACATACAATCCATAAGAGCTGCCTGAATGAAATGAGGGAGCATTTCCGGTATGCCTGCCCTCTCTGCTCGGCGTCAGTCTGTGATATGTCAAAGGTTTGGGAGAAATTTGACCTAGAGATTGCTGCTACACCAATGCCTGAACCTTATCAACATAAAATGGTTTGGATTCTTTGTAATGACTGTGGTAAAACTTCTCACGTTCAGTTCCATTTTGTGGGTCAAAAGTGCCTGAACTGCAGGTCCTACAATACACGACAAACATGA 924 0.421 MGEVAVMRSEPLQFDCNDIKDMTEKEMYPPESNAEDLHGEESCQSTDPKNINELRDKGYMEYGCQHYRRRCRIRSPCCNEIFDCRHCHNEAKNDINIDQKDRHDIPRHQVKQVICSLCGTEQEVQQNCINCGVCMGKYFCGTCKLFDDDISKQQYHCSGCGICRTGGSENFFHCYKCGCCYSTLLKNSHPCVERAMHHDCPVCFEYLFESRNDVTVMPCGHTIHKSCLNEMREHFRYACPLCSASVCDMSKVWEKFDLEIAATPMPEPYQHKMVWILCNDCGKTSHVQFHFVGQKCLNCRSYNTRQT* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0583 307 Gene3D - 271 307 - -
Pvu1g0583 307 SUPERFAMILY RING/U-box 199 248 - -
Pvu1g0583 307 ProSiteProfiles Zinc finger CHY-type profile. 57 133 IPR008913 GO:0008270
Pvu1g0583 307 SUPERFAMILY Zinc hairpin stack 136 193 IPR037275 -
Pvu1g0583 307 ProSiteProfiles Zinc finger CTCHY-type profile. 135 199 IPR017921 -
Pvu1g0583 307 SMART ring_2 200 242 IPR001841 -
Pvu1g0583 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 244 IPR013083 -
Pvu1g0583 307 ProSiteProfiles Zinc finger RING-type profile. 200 243 IPR001841 -
Pvu1g0583 307 Pfam Ring finger domain 199 242 IPR001841 -
Pvu1g0583 307 SUPERFAMILY CHY zinc finger-like 61 135 IPR037274 GO:0008270
Pvu1g0583 307 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 22 307 - -
Pvu1g0583 307 Pfam Zinc-ribbon 247 305 IPR039512 -
Pvu1g0583 307 Pfam CHY zinc finger 64 145 IPR008913 GO:0008270
Pvu1g0583 307 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 22 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0583 Pvu-Chr1 6662038 6667903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0583 54 305 C2H2 Transcription Factor Family AT3G18290 37.984 4.28e-52 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0583 K10144 - gmx:100803569 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0583 1 6662038 6667903 Pvu9g1015 9 15094895 15100809 PCT