Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0575 ATGAATCAGGGACCACAATATGTGTGTACAACTTTCTCCACATTTATCTGCACAAATTGCAGTGGGATACATAGAGAGTTTACCCACAGAGTAAAATCTGTCTCAATGGCTAAATTTAGTCCAGAAGAAGTAACTGCACTTCAAGCTGGTGGAAATGAGAGAGCAAAGCAGATTTATTTTAAACAATTGGATCCTCTTCTCCATTCTAATCCAGATTCCAGTAATATACCCAAACTCCGAGAATTCATTAAGCATGTGTATGTGGAAAGAAGATACACTGGCGAAAGTAGCAGTAGCAGTCTTTCTAGGCTAAGATCGAGTGAGAAGGAGTCCAATGCAACTAAGAGAAGTAGTTCATTTCGCTTAGAGTTGAGAACTCCACATTCAAGTCCTGGTCCTACTCCAAGAAGTGATGACAAGAATTTGAGATACTTATATGATGAGAGCAGAAGCCCTAGATATGCACAAAGGTATTCAAGGAATGGAGGGCAGATCAGAAGTCCTATAAAAATTGAAGTTGTTGATGACAGGTACAGAGATGAAGAACGTAGAAATAGAAGACTTTCAAATATAGAAGCAAAGCTAAAGAAAACTTCTATTGATGATAAGAAGAATGTGGAAAGCTCCCAACACCATGTTGCACCTCCTTTGGCTGAAGTGTCAAGGGAGAAAGTTCAACCTCTACAAATCAAACCTCCTGGTGGCAAGAGTTCTGTTGAGCAAAAACCATCTGAACAAAAAAATAATAATCCAGAAACACCACCACCTACAACACAATCAAATGAAAGTAACTGGGCCATATTTGAAGTACCAACAGAGAAAGATGATCCTAAAACTCCAAACAAAAATACCTCTACTCCTTCTACAGAAAAGGCAGCATCTGAACCAGCACCACCACCAGCAAAAAATCCTATAGACCTTTTACTTTCTGAATTGTCAGGCCCTGTCACTCCAGTGACCAGTGGCATGCCACAAGTTCCAAGTAGTGTTAATGATGATCCAACAACTACAACAGTACAAAATGCTATAACTTGGGACTTTCCACCTCCTTCAACAGGGAAGACAACTGCATCATCCAACAATACTAGTGTTTGGCCGTCCCCATCAACCCCAGCCACTGAACCAGCACAACTTTCTATTGAAGCTCCTCCACATACCGAACTTTCACGTGCACATAATCCATCAAACATGCAATATCTTCCCTCTGTATCTGTAGGTTTTAGTTCAACTACACAACCAACAAATTCACCAGTCAAAGATGTAGCTTCAAGTAATAAGCCATCAGTAGCTCCTAGTGAAAAAGATTCTTCATGGTCTTTTACTGAACTACCTTCTCCAACTACCTCAAAGCCCATTCAGGAAACCATATCTGATGTTGGCTCCCAGCCCAGTAAAGTTGAAACCAGGGCTAGTGGAAGACAGGAACTTCCAGAGGACCTTTTTGCATCAAGCTATTTATCTGGCCGAGCACCACTTCCAAATTGGCAGAATGTTCAACCTCAAGGAATGGGATATGGCATGCAGTATTATCATAATGCAGTGCCTCCCACAACCCTTTCAAATTCATCAATGTCCACAAACCCCTTTGATGTAACTGATGCAAGAAGTTTAATCCATGTCTCATCGGTTCCTTCTATGGCTTCTGTGCACTGTGCACCGCAAGCTGTATTATCTCCCAGAACAGCATTGATGCATACTTCAAGCCTCGGGTCTTTGGTGTCTCAGTCACCAAGTTACACATCCCCTGTTACGGGTATGTACTTTGATCAAGTTGATAATGAGAAGCAACCCACTAGACTACAAAGAGTTGAGAGCTCCAATGGTGAGATAACTTCTTTTGGGTCTATAGACCCCATTCAACAGTCAAATAGAGGATTCATGACCTCCAAAAGTTCAATTTCTTTTTCCAATACAAAAGGAAACCCATTTGACTAG 1935 0.4119 MNQGPQYVCTTFSTFICTNCSGIHREFTHRVKSVSMAKFSPEEVTALQAGGNERAKQIYFKQLDPLLHSNPDSSNIPKLREFIKHVYVERRYTGESSSSSLSRLRSSEKESNATKRSSSFRLELRTPHSSPGPTPRSDDKNLRYLYDESRSPRYAQRYSRNGGQIRSPIKIEVVDDRYRDEERRNRRLSNIEAKLKKTSIDDKKNVESSQHHVAPPLAEVSREKVQPLQIKPPGGKSSVEQKPSEQKNNNPETPPPTTQSNESNWAIFEVPTEKDDPKTPNKNTSTPSTEKAASEPAPPPAKNPIDLLLSELSGPVTPVTSGMPQVPSSVNDDPTTTTVQNAITWDFPPPSTGKTTASSNNTSVWPSPSTPATEPAQLSIEAPPHTELSRAHNPSNMQYLPSVSVGFSSTTQPTNSPVKDVASSNKPSVAPSEKDSSWSFTELPSPTTSKPIQETISDVGSQPSKVETRASGRQELPEDLFASSYLSGRAPLPNWQNVQPQGMGYGMQYYHNAVPPTTLSNSSMSTNPFDVTDARSLIHVSSVPSMASVHCAPQAVLSPRTALMHTSSLGSLVSQSPSYTSPVTGMYFDQVDNEKQPTRLQRVESSNGEITSFGSIDPIQQSNRGFMTSKSSISFSNTKGNPFD* 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0575 644 PANTHER ARFGAP/RECO-RELATED 4 644 IPR044820 GO:0005096
Pvu1g0575 644 MobiDBLite consensus disorder prediction 117 136 - -
Pvu1g0575 644 MobiDBLite consensus disorder prediction 97 143 - -
Pvu1g0575 644 Pfam Putative GTPase activating protein for Arf 3 93 IPR001164 GO:0005096
Pvu1g0575 644 SMART arf_gap_3 2 100 IPR001164 GO:0005096
Pvu1g0575 644 MobiDBLite consensus disorder prediction 596 644 - -
Pvu1g0575 644 MobiDBLite consensus disorder prediction 389 469 - -
Pvu1g0575 644 PANTHER ARFGAP/RECO-LIKE ZINC FINGER DOMAIN-CONTAINING PROTEIN 4 644 - -
Pvu1g0575 644 MobiDBLite consensus disorder prediction 314 376 - -
Pvu1g0575 644 ProSiteProfiles ARF GTPase-activating proteins domain profile. 1 100 IPR001164 GO:0005096
Pvu1g0575 644 MobiDBLite consensus disorder prediction 239 267 - -
Pvu1g0575 644 PRINTS HIV Rev interacting protein signature 13 30 IPR001164 GO:0005096
Pvu1g0575 644 PRINTS HIV Rev interacting protein signature 31 52 IPR001164 GO:0005096
Pvu1g0575 644 SUPERFAMILY ArfGap/RecO-like zinc finger 3 93 IPR037278 -
Pvu1g0575 644 MobiDBLite consensus disorder prediction 199 473 - -
Pvu1g0575 644 CDD ArfGap_AGFG 4 92 - -
Pvu1g0575 644 MobiDBLite consensus disorder prediction 600 644 - -
Pvu1g0575 644 Gene3D Arf GTPase activating protein 1 104 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0575 Pvu-Chr1 6590368 6596754 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0575 5 87 C2H2 Transcription Factor Family AT4G05330 35.227 6.09e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0575 - - vun:114194797 949.888