Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0570 ATGGAGCGGCCTGGGAGCACCAATGGCAGTCAGCATGTGATAGAAATAGCTGGGAGTTCCGATGCTTCCACATCATCTGCGACACATCATGATAGGAGTTTTAATGGCACAGATGTGGCGCTGCATGAAGAAAGAATTACCGGTGCAAGGACGCCTCTATCTCAGCCTTCAGTTTCAGTCACTAGTTTATCTAATGGGTCTAATAGTCGGAATTCCTCATTCATGAGACGCGGGGATACTCGTAGGAGTAGGAGTCCTGTGCATTCGGGGTTGTGGATATCGATTGAGCTGGTCCTCTTAGTGAGCCAGATTGTTGCATCTATCGTTGTTTTGTCTTTGTCAAGGCATGAACGTCCACGTACTCCATTGTTTCAATGGATCATAGGTTATGCTTCTGGATGTGTTGCTACCCTTCCTCTGCTTTATTGGCGGTATTATCATCATAACCATATGAGAGAGCAAGATTCTTCTCAATCAAGGCAAACATCTCCTCGGATTAATGATCCTTCAGGGACACTCCTTTTCAGTTCCAGAACTAATGGTGGAGAAGATGGTCAGGCTGTTGCATCCTCCAGAAGCAATCAAGCTTCTGTGTTGATGAATAGAAGAATGAAGACTCTAGTGGAATACTTCAAAATATCTTTAGATTGCTTTTTTGCTGTATGGTTTGTTGTTGGAAATGTATGGATCTTTGGGGGACGTTCTTCTGCTGATGAAGCTCCTAACTTGTACAGGTTATGTATAGTGTTTCTTGCCTTTAGCTGTATTGGTTATGCTATGCCCTTCATTCTCTGTTCAACAATCTGCTGTTGTCTCCCATGTATAATTTCCATTCTTGGGGTTAGAGAGGATATGCCTCAAAACAGAGGGGCAACTTCTGAATCCATTAATGCTTTGCCAACGTACAAGTTCAAGATGAAGAAAAATAAAAAAAATGGAGAAGGCAACTCAACTGAAGGTGGAGTTGTGGCTGCAGGAACTGAAAAAGAGCGAGTAATATCTGGAGAAGATGCGGTATGCTGCATCTGCCTGGCAAAGTATGAAAATAACGATGAGTTGAGAGAATTGCCTTGTTCTCATCTTTTCCACAAAGATTGTGTGGATAAATGGTTGAAGATAAATTCATTATGCCCTCTTTGCAAGAGTGATGCTGGTGAGAACTTAACAGGATTGGTCTCAGGAGAAGATGCCATCCAACATCGGAGTGAGAGCAGGATTGAGAATGACCTCGCGAGTACCTCAGTTTAG 1248 0.4311 MERPGSTNGSQHVIEIAGSSDASTSSATHHDRSFNGTDVALHEERITGARTPLSQPSVSVTSLSNGSNSRNSSFMRRGDTRRSRSPVHSGLWISIELVLLVSQIVASIVVLSLSRHERPRTPLFQWIIGYASGCVATLPLLYWRYYHHNHMREQDSSQSRQTSPRINDPSGTLLFSSRTNGGEDGQAVASSRSNQASVLMNRRMKTLVEYFKISLDCFFAVWFVVGNVWIFGGRSSADEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDMPQNRGATSESINALPTYKFKMKKNKKNGEGNSTEGGVVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINSLCPLCKSDAGENLTGLVSGEDAIQHRSESRIENDLASTSV* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0570 415 CDD RING-H2_RNF111_like 339 383 - -
Pvu1g0570 415 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 406 - -
Pvu1g0570 415 SUPERFAMILY RING/U-box 332 385 - -
Pvu1g0570 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 386 IPR013083 -
Pvu1g0570 415 SMART ringv_2 339 381 IPR011016 GO:0008270
Pvu1g0570 415 Pfam Ring finger domain 340 381 IPR001841 -
Pvu1g0570 415 ProSiteProfiles Zinc finger RING-type profile. 340 381 IPR001841 -
Pvu1g0570 415 MobiDBLite consensus disorder prediction 50 74 - -
Pvu1g0570 415 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 406 - -
Pvu1g0570 415 SMART ring_2 340 380 IPR001841 -
Pvu1g0570 415 MobiDBLite consensus disorder prediction 47 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0570 Pvu-Chr1 6489317 6496785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0570 76 387 C3H Transcription Factor Family AT1G80400 57.233 2.42e-136 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0570 - - gmx:100778728 709.523