Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0568 ATGATGGATAAAGAGAATGCTGTAATAGGTGGTCGAGTGACGCGAGCAATGGCTAGAGCTTTGAGAGAGGTCTCTGCCTCTTCGAGACCGTGCTTTAAGAAACAACGCAAAAGCAAATTGGAGAAGAGCAGTAGAGCCGCACTGACGGATGTAACCAATGAATACAGAAAACCGCAGCTCAATAACAGTGCTGCTTCCAATTCTCAGACAAGAGGAGGCCATAGGAAGCCAAACACAAAGGGAGCTTCCAATGTCTCCATGCAAGTTTTGTCAACTCGAGATGTTCGAGCAAAGTCAGCAAAAGATTTATCCGCAGTATCGATGGTACAGTCACATGACGTTGTTTTTGCTGAAAGGCTGGAAGACAGAGAGCTAGTGCAACCTTCTATGTCTGTCATGGCAGGTCCCCTGCTTTCAATGCAGGACTCTGTGGAATCTGATGAACTCCTTGGCTCTCCGAACAAAGATATTGATATGATTTCAGAGAAACTAAAACATTCGGATGGTTTGGGCATTGTGGACATTGATTCAGTGGAGTTAAAGGATCCTCAAGTTTGGAGTTCATATGCCCCTGATATATACAATAATATATTTGTCAGAGAGTTTGAAAAGAGACTAACCGATTACATGGGCGAGCTGCAAAAAGATATCACTCCGAGCATGCGCGCAATTCTGATTGATTGGCTTGTGGAGGTTTCTGAGGAATATAAGTTAGTTCCAGATACTCTTTACCTTACTGTGAATCTCATTGATCGGTTTCTTTCTCAAAGTTTGATTCAGAAACAGGGACTCCAGTTGCTGGGTGTTACTTGCATGCTGATTGCATCAAAGTATGAAGAGATTTGTGCTCCTCGAGTGGAAGAATTTTGCTTCATCACAGATAATACGTACACAAAGGCAGAGGTATTGAGAATGGAGAGTGAGGTTCTAAATCTGTTGCATTTTCAATTATCTGTTCCCACCGCTAAAACATTTCTCAGGAGGTTCATCCTTGCAGCACAATATTCTTGTAAGGTTTCTTATGTTGAAGTGGAATTTCTGGCAAATTATTTAGCAGAACTCACTCTTGTTGAATACAGCTTCTCGCAGTTTCGACCTTCCTTGGTAGCTGCCTCTGCTGTATTAATAGCCAGATGGACCCTCAACCAGTCAGAACATCCATGGAATTCAACTATGGAACACTATACAAATTACAGAGTGTCAGAACTTAAAACTACTGTCCTTGCACTGGCAGATTTGCAACTTAATACCAAAGGCTGTCCTCTGAATGCTATACGTGACAAATATAAACAGCAGAAGTTCATGAGTGTGGCAAATTTGTCTCCAAAACCAGTGCAGTCACTTTTTGAGGCCGAAGTATAA 1362 0.4214 MMDKENAVIGGRVTRAMARALREVSASSRPCFKKQRKSKLEKSSRAALTDVTNEYRKPQLNNSAASNSQTRGGHRKPNTKGASNVSMQVLSTRDVRAKSAKDLSAVSMVQSHDVVFAERLEDRELVQPSMSVMAGPLLSMQDSVESDELLGSPNKDIDMISEKLKHSDGLGIVDIDSVELKDPQVWSSYAPDIYNNIFVREFEKRLTDYMGELQKDITPSMRAILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQSLIQKQGLQLLGVTCMLIASKYEEICAPRVEEFCFITDNTYTKAEVLRMESEVLNLLHFQLSVPTAKTFLRRFILAAQYSCKVSYVEVEFLANYLAELTLVEYSFSQFRPSLVAASAVLIARWTLNQSEHPWNSTMEHYTNYRVSELKTTVLALADLQLNTKGCPLNAIRDKYKQQKFMSVANLSPKPVQSLFEAEV* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0568 453 PANTHER CYCLINS 33 449 IPR039361 -
Pvu1g0568 453 Gene3D - 206 318 - -
Pvu1g0568 453 SUPERFAMILY Cyclin-like 181 317 IPR036915 -
Pvu1g0568 453 ProSitePatterns Cyclins signature. 222 253 IPR006671 -
Pvu1g0568 453 PIRSF Cyclin_A_B_D_E 9 452 IPR039361 -
Pvu1g0568 453 Pfam Cyclin, C-terminal domain 320 442 IPR004367 -
Pvu1g0568 453 SMART Cyclin_C_2 320 443 IPR004367 -
Pvu1g0568 453 MobiDBLite consensus disorder prediction 26 88 - -
Pvu1g0568 453 PANTHER CYCLIN-A2-4 33 449 - -
Pvu1g0568 453 Pfam Cyclin, N-terminal domain 192 318 IPR006671 -
Pvu1g0568 453 Gene3D - 192 439 - -
Pvu1g0568 453 CDD CYCLIN 221 310 IPR013763 -
Pvu1g0568 453 Coils Coil 451 453 - -
Pvu1g0568 453 CDD CYCLIN 318 410 IPR013763 -
Pvu1g0568 453 SUPERFAMILY Cyclin-like 319 442 IPR036915 -
Pvu1g0568 453 MobiDBLite consensus disorder prediction 45 88 - -
Pvu1g0568 453 SMART cyclin_7 324 412 IPR013763 -
Pvu1g0568 453 SMART cyclin_7 227 311 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0568 Pvu-Chr1 6458056 6464471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0568 12 449 Core Cell Cycle Gene Families AT5G25380 51.556 2.31e-138 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0568 K06627 - gmx:100777132 689.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0568 1 6458056 6464471 Pvu9g1000 9 14960125 14965937 PCT