Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0560 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACCTAGTGAAGAGGGATTTGAAGGCCTCAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTGTCGTCGGACCCTGTTGCTATTGATGCACCCGGAGGATTTCTGTTCGAGTGGTGGTCTGTTTTCTGGGACATATTTATTTCCAGGACCAATGAGAAGCACTCTGAGGTTGCTGCATCTTATATCGAGACACAATTTATGAAGGCTAGAGAGCAACAACAGCAGCAGCAACAGCAACAGCAGCAGCAGCCACAACCTCAGCAGTCGCAACATCAGCAGCAACAGCAGCAGCAACAACAACACATACAGATGCAACAAATCCTGTTACAGAGGGCTCAGCAACAGCAGCAGCAGCAACAACAACAGCAACAGCAGCAACCACAACAGCAACAGCAACAGCAACAGCAGCCACAACATCAGCAGCCACCACCTCAGCAGCAGCAGGGTAGGGAAAGGACTCATCTCTTAAATGGTGGTACCAATGGGTTAGTTGGAAACCCTAGCACTGCAAATGCACTGGCAACAAAGATGTATGAGGAAAGGTTAAAACTTCCCCTTCAAAGGGACTCTTTGGAAGATGCAGCAATGAAGCAAAGATTCGGAGGCCAACTCTTGGACCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCTACCGGCCAGCCTTCAGGCCAAGTTTTGCATGGTGCTGCTGGTGCAATGTCTCCACAAGTTCAAGCACGTAGTCAGCAATTACCAGGGTCTACTCCGGATATAAAGAGTGAGATCAATCCTGTTTTAAATCCCAGAGCTGCAGGTCCTGAAGGATCATTGATAGCTATGCCTGGTTCAAATCAAGGTAGCAACAATTTAACTCTAAAAGGGTGGCCACTAACGGGGTTGGAGCAACTACGTTCTGGTCTACTTCAGCAACAGAAACCACCTTTCATACAGTCTCCTCAACCATTTCATCAACTTCCAATGTTGACACCACAACATCAGCAACAGCTAATTCTGGCACAGCAAAATTTGGCATCACCATCTGGCAGTGATGATAATAGAAGACTCAGAATGCTGCTGAGTAACAGGAATATGGGTGTAGCTAAGGATGGTCTTTCGAACCCTGTTGGTGATGTTGTATCAAATGTTGGATCACCTCTTCAAGCAGGTGGCCCCGCTTTCCAGCGCAGTGATACAGACATGCTAATGAAGTTGAAACTGGCACACTTACACCAACATCAACAACAGCAGAATGCCAATCCACAACAGCAGCAACTGCAACAGCATACTCTATCAAATCAGCAATCTCAGTCTTCAAATCATAACATGCATCAGCAGGATAAAATGGGGGGAGGTGGTGGTAGTGTCAATGTGGATGGTAGCATGTCAAACTCCTTTAGAGGCAACGATCAGGTTTCCAAAAGCCAGACTGGGAGAAAGAGAAAGCAGGCTGCATCTTCTGGTCCTGCCAATAGTTCTGGAACAGCTAATACAGCTGGCCCATCTCCAAGTTCAGCACCCTCGACTCCCTCGACACATACACCCAGTGATGTGATGTCAATGCCTGCTTTGCCTCATAGTGGTAGTTCTTCAAAGCCATTAATGATGTTTGGCGCTGATGGTGCTGGAACTCTTACATCACCTTCAAACCAGTTGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTAGACGATAATGTTGAGTCTTTTTTATCCCATGATGATAACGACCCGAGAGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAATAAATTCTGTACCTGCAAGCACTAACAAAGTTGTCTGTTGCCATTTCTCGTCTGATGGGAAATTGCTTGCTAGTGGTGGCCATGACAAAAAGGCTGTTTTATGGTTCACAGATTCTCTAAAACAAAAGACTACTCTTGAAGAACATTCTTCTTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGCCTTGCTACATCTTCATATGACAGAACTGTCAGGGTGTGGGATGTTGATAATCCTGGATATACGCTTCGTACTTTTACTGGTCATTCTTCATCTGTTATGTCACTAGATTTTCACCCTAATAAAGATGATCTTATCTGCTCTTGTGATGTTGATGGTGAGATACGATATTGGAGCATTAACAATGGCAGTTGTGCTAGAGTCTCAAAGGGTGGCACTGCTCAGATGAGATTTCAACCACGTCTAGGGAGGTTCCTAGCTGCAGCTGCTGAGAATGTTGTTTCAATATTTGATGTGGAAACGCAAGCATGTCGATATTCATTAAAGGGACATACAAAATCAATACATTCTGTGTGTTGGGATCCTTCTGGGGAGTTCCTGGCATCTGTCAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCAGGGAGTGAAGGGGAGTGTGTTCACGAGCTTAGCTGCAATGGCAATAAGTTCCACTCATGTGTTTTCCATCCAACATTTTCTTCGCTGTTGGTAGTTGGTTGTTACGAGTCATTGGAGCTCTGGAACATGACTGAGAACAAGACAATGACTCTATCCGCTCATGAAGGTCTTATTGCTGCATTGGCGGTTTCTACTGTAAATGGTTTGGTTGCTTCTGCCAGTCATGACAAGTTTGTGAAGCTCTGGAAGTGA 2688 0.4528 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFISRTNEKHSEVAASYIETQFMKAREQQQQQQQQQQQQPQPQQSQHQQQQQQQQQHIQMQQILLQRAQQQQQQQQQQQQQQPQQQQQQQQQPQHQQPPPQQQQGRERTHLLNGGTNGLVGNPSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGGQLLDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLIAMPGSNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPPFIQSPQPFHQLPMLTPQHQQQLILAQQNLASPSGSDDNRRLRMLLSNRNMGVAKDGLSNPVGDVVSNVGSPLQAGGPAFQRSDTDMLMKLKLAHLHQHQQQQNANPQQQQLQQHTLSNQQSQSSNHNMHQQDKMGGGGGSVNVDGSMSNSFRGNDQVSKSQTGRKRKQAASSGPANSSGTANTAGPSPSSAPSTPSTHTPSDVMSMPALPHSGSSSKPLMMFGADGAGTLTSPSNQLADVDRFVEDGSLDDNVESFLSHDDNDPRDTVGRCMDVSKGFTFSEINSVPASTNKVVCCHFSSDGKLLASGGHDKKAVLWFTDSLKQKTTLEEHSSLITDVRFSPSMPRLATSSYDRTVRVWDVDNPGYTLRTFTGHSSSVMSLDFHPNKDDLICSCDVDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGRFLAAAAENVVSIFDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTFSSLLVVGCYESLELWNMTENKTMTLSAHEGLIAALAVSTVNGLVASASHDKFVKLWK* 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0560 895 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 863 895 - -
Pvu1g0560 895 Gene3D - 747 895 IPR015943 GO:0005515
Pvu1g0560 895 Gene3D - 589 746 IPR015943 GO:0005515
Pvu1g0560 895 CDD WD40 615 895 - -
Pvu1g0560 895 MobiDBLite consensus disorder prediction 420 544 - -
Pvu1g0560 895 MobiDBLite consensus disorder prediction 145 185 - -
Pvu1g0560 895 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 653 688 - -
Pvu1g0560 895 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 895 IPR044716 GO:0003714
Pvu1g0560 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 611 642 IPR001680 GO:0005515
Pvu1g0560 895 MobiDBLite consensus disorder prediction 420 456 - -
Pvu1g0560 895 MobiDBLite consensus disorder prediction 253 272 - -
Pvu1g0560 895 MobiDBLite consensus disorder prediction 235 304 - -
Pvu1g0560 895 SUPERFAMILY WD40 repeat-like 607 895 IPR036322 GO:0005515
Pvu1g0560 895 SMART Lish 8 40 IPR006594 GO:0005515
Pvu1g0560 895 Coils Coil 119 142 - -
Pvu1g0560 895 Pfam LisH 10 36 IPR006594 GO:0005515
Pvu1g0560 895 MobiDBLite consensus disorder prediction 90 113 - -
Pvu1g0560 895 ProSitePatterns Trp-Asp (WD) repeats signature. 672 686 IPR019775 -
Pvu1g0560 895 Pfam WD domain, G-beta repeat 616 642 IPR001680 GO:0005515
Pvu1g0560 895 Pfam WD domain, G-beta repeat 774 808 IPR001680 GO:0005515
Pvu1g0560 895 Pfam WD domain, G-beta repeat 858 895 IPR001680 GO:0005515
Pvu1g0560 895 Pfam WD domain, G-beta repeat 650 685 IPR001680 GO:0005515
Pvu1g0560 895 Pfam WD domain, G-beta repeat 692 729 IPR001680 GO:0005515
Pvu1g0560 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 653 688 IPR001680 GO:0005515
Pvu1g0560 895 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Pvu1g0560 895 MobiDBLite consensus disorder prediction 467 537 - -
Pvu1g0560 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 863 895 IPR001680 GO:0005515
Pvu1g0560 895 SMART WD40_4 815 854 IPR001680 GO:0005515
Pvu1g0560 895 SMART WD40_4 856 895 IPR001680 GO:0005515
Pvu1g0560 895 SMART WD40_4 604 643 IPR001680 GO:0005515
Pvu1g0560 895 SMART WD40_4 689 729 IPR001680 GO:0005515
Pvu1g0560 895 SMART WD40_4 646 685 IPR001680 GO:0005515
Pvu1g0560 895 SMART WD40_4 732 768 IPR001680 GO:0005515
Pvu1g0560 895 SMART WD40_4 771 809 IPR001680 GO:0005515
Pvu1g0560 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 696 738 IPR001680 GO:0005515
Pvu1g0560 895 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 895 - -
Pvu1g0560 895 ProSiteProfiles Trp-Asp (WD) repeats profile. 778 818 IPR001680 GO:0005515
Pvu1g0560 895 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 696 734 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0560 Pvu-Chr1 6298862 6313234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0560 690 894 Miscellaneous Gene Families AT5G08390 25.714 5.38e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pvu1g0560 WD40 0.08 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0560 - - gmx:100779972 1466.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0560 1 6298862 6313234 Pvu9g0990 9 14845791 14854165 PCT