Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0547 ATGGTGTACTGCAGTCACTGTGCCAAAAATGTAGCTGGGGAGCGACTAGATGACGGTTTCTTATGTTGTGGAAGCTGTGGGAGGGTGTTGGAAGATTACTTTTTTGCTGAGGAGCCTACATTTGTCAAGAATGCGGCAGGGCAGAGTAAATTATCAGGTAATTATGTAAGAACAGTTCAAAGCGAGTTCTCTGAATCACGTCAAAGGACTTTAGATAGAGCTTATGATGAAATTAAATATCTAAGTATGGGCCTTGGAGTTCATGATGAACATATGGCTGACCAAGCATTGACCTTTTATAAAATAGCGCTTGAGCGAAATTTCACCCGTGGACGTAAATCAGAGCAAGTACAGGCTGCTTGTCTCTATATTGCATTTCGGCACAACAATAAGCCGTACCTTCTTATTGATTTTTCAATTTTTTTAAGAATAGATGTTTATGTGCTAGGATCAGTTTTCTTGCAGCTTTGTGAAGTGTTGAGGCTTGGAGAGCACCCAATTGTTCAAAAGCCTGTTGATCCTAGTCTTTTTATTCATAGATATACTAAAAATTTGATTAAGCGAGGGACTAAGGCAGTATCTGATACTGCACTGACCATTGTTGCAAGCATGAAACGGGACTGGATGCAGACAGGTAGGAAACCTAGTGGTCTATGCGGTGCGGCAATATACATTTCTGCTCTTGCACATGGAATTAAATGCTCTAAACCCGATATTCTTAGAATCGTCCATGTGTGTGAAGCAACATTGACCAAGCGATTGGTTGAATTTGAAAATACGGAATGTTCTAGCTTGACAGTTGAGGAGTTGGATACCATGGCAAAGGAGCATGAAAAAAATCCAACGGTAATGGCAGAAGGTGAATTGAAAGGGTGTATTTCAAAAGATCTACTATGTGAGCACAAGGATAGTGGGGCGTCCCATTTTGCTCTTGGATTGTGCGAAGCATGCTATAAGGATTTCGATAAGCTCTCTGGTGGACTTGCTGGTGGTTTGGATCCTCCTGCATTCCAGCGTGCTGAGCGGGAAAGAATGAAAAGAGCACTTCTCAAAGAGAGTGTTGATGAAGCATGTGATTTAGCGAATGCATCAAATGATCAGTTTAAGAGCCACCCAGAAGATTTGCCTGCCTGTGTGCCAGAAGGTATGGTGGGTGCTCTTATTTCATTCACTCTTGCTATCATGGCTAATGTTGCCCATGAGGCCACTAAAGATGGTAAATATGAAGATGATGATTCATTTAGAGAAGATGAATCAGAAACTTTATCTGATATTGATGATAAAGACGTTGATTTATACATTCATGATGAGGAGGGGAGACATATCAAGAAGATACTATGGGAAACAGCAAATTGGGAGTATCTTGAGGAGCAAGCAGCCAAGGAAGCAATTGCAGCAGCTAATAAGAAAGCTTTTGAGGCAAATTTTGAGAACTGGGGAAAGCAACAAATTTATCCTCAGCCATGTTTTGAAGGTCCCAGGCTTATATGCATATTATGTATTGTGGTTTGGAAGGGGACTCCATCTCGAGTCTCTAAGGAGCTACAAGATCTGGAATTGTTTTTTTTAAAGCTTAAGGAAATGAAACAGAGACGAGCCAATGAGGCAAAAAATATGGGGCCAGCTCAATCTGCTGCGGAGGCCTTCGGCCAAATGTCTAATAAAAAAAGGCAATTGCAGAGTCTGAAATCTAAAGTCAATTTTGATCGCCTGGGTGAATTATTTAATGAACTGGAGAAAACCGATGATCCCAAGAAAGAGAAGAAAGCACGGTTGGATCCGCCCCTAGATAAGTCATTTGAGGACAAGAATGACGATGAGATGGGATCAGTGGATGAATTCGAAGATGATATGGGGGAGATGTATCAAAATGGGTTGTCCACTGATAATATTGCAGATGCATATTACCCTGAGGATGATGGATACGGCTATAACGATGATGATTATTACTGA 1953 0.4117 MVYCSHCAKNVAGERLDDGFLCCGSCGRVLEDYFFAEEPTFVKNAAGQSKLSGNYVRTVQSEFSESRQRTLDRAYDEIKYLSMGLGVHDEHMADQALTFYKIALERNFTRGRKSEQVQAACLYIAFRHNNKPYLLIDFSIFLRIDVYVLGSVFLQLCEVLRLGEHPIVQKPVDPSLFIHRYTKNLIKRGTKAVSDTALTIVASMKRDWMQTGRKPSGLCGAAIYISALAHGIKCSKPDILRIVHVCEATLTKRLVEFENTECSSLTVEELDTMAKEHEKNPTVMAEGELKGCISKDLLCEHKDSGASHFALGLCEACYKDFDKLSGGLAGGLDPPAFQRAERERMKRALLKESVDEACDLANASNDQFKSHPEDLPACVPEGMVGALISFTLAIMANVAHEATKDGKYEDDDSFREDESETLSDIDDKDVDLYIHDEEGRHIKKILWETANWEYLEEQAAKEAIAAANKKAFEANFENWGKQQIYPQPCFEGPRLICILCIVVWKGTPSRVSKELQDLELFFLKLKEMKQRRANEAKNMGPAQSAAEAFGQMSNKKRQLQSLKSKVNFDRLGELFNELEKTDDPKKEKKARLDPPLDKSFEDKNDDEMGSVDEFEDDMGEMYQNGLSTDNIADAYYPEDDGYGYNDDDYY* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0547 650 MobiDBLite consensus disorder prediction 579 605 - -
Pvu1g0547 650 MobiDBLite consensus disorder prediction 533 553 - -
Pvu1g0547 650 Gene3D Single helix bin 416 464 - -
Pvu1g0547 650 CDD CYCLIN 173 248 IPR013763 -
Pvu1g0547 650 SUPERFAMILY Zinc beta-ribbon 2 43 - -
Pvu1g0547 650 Gene3D - 63 164 - -
Pvu1g0547 650 Gene3D - 173 263 - -
Pvu1g0547 650 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 579 IPR000812 GO:0006352|GO:0070897
Pvu1g0547 650 SMART cyclin_7 176 259 IPR013763 -
Pvu1g0547 650 SMART cyclin_7 76 158 IPR013763 -
Pvu1g0547 650 MobiDBLite consensus disorder prediction 579 650 - -
Pvu1g0547 650 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Pvu1g0547 650 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Pvu1g0547 650 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Pvu1g0547 650 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 1 579 IPR029529 GO:0000126|GO:0000995|GO:0006383
Pvu1g0547 650 Pfam Brf1-like TBP-binding domain 423 576 IPR011665 -
Pvu1g0547 650 CDD CYCLIN 74 138 IPR013763 -
Pvu1g0547 650 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Pvu1g0547 650 Pfam Transcription factor TFIIB repeat 169 259 IPR013150 GO:0017025
Pvu1g0547 650 SUPERFAMILY Cyclin-like 74 162 IPR036915 -
Pvu1g0547 650 SUPERFAMILY Cyclin-like 172 264 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0547 Pvu-Chr1 6149222 6164325 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0547 1 562 Inorganic Solute Cotransporters AT2G01280 38.354 2.80e-100 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0547 K15196 - gmx:100817609 938.717