Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0542 ATGGCAAAGAAGAAGAATTGTCTGGTGTTTATGGATGTGTCCATCGATGGGGATCCGGTTGAAAGGATGGTTTTTGAGCTTTTCTATGATGTTGCTCCGAAGACTGCTGAAAATTTCCGTGCATTGTGCACAGGAGAAAGAGGAGTCGGTCCAAGTACTGGAAAGTCGCTGCACTACAAGGGTTCTTTCTTTCATCGAATTGTAAAAGGCTCCATTGCCCGGGGTGGAGATTTTGTAAACAGGAATGGGACTGGTGGAGAAAGCATATATGGTTCCAAGTTCCCAGATGAATCACCTAGGCTAAAGCATGATGCTCCAGGTCTTCTTTCCATGCCAGTTGCTGATCGTGACAGTCTTGGTTCTCATTTTATCATCACTTTTAAATCTGATCCACATCTTGATAGGAAACATGTAATCTTTGGCAAGCTTGTGCAAGGGCATAATATATTGAAGAAAATTGAAGATGTGGGTGATGAAGAAGGACTTCCAAGCGTAACTGTTAAAATAATTAATTGTGGTGAACATAATGAGGATGGAAAGAAGATAAATAAGTCAAAAAAGGGAAGAGATGGATCTACTGAAACCCATAGTCCTGAACTGCATAGGGGAAAGCGCAAAAAATCTTCAGGGGACAAAAGGAAAAGGAGAAAGTACTACTCATCAGTATCGAATAGTTCCTCAGATTCAGACACGAAATCTTCAGAAAGTGATAGTGATTCTGACTCAGATACATCCTCATCTTACACAAGTTCCTCCAGTGATGACAGGCGGAGAAAGAGAAAGAGGTCTAGGAAAGATAAACATAGACGTGGAAAAAAAAGAGACCAACACCGGGACAAGAGACGAAGGAAACAAGACAAAAGATCAAAGCGTAAATCAAGAAGGGAATTGACCTGTCATACTGAGTCAGATAGTGATAATAAGAGTGGCAACAGCTCTGGTGGTGAAAGTTGTGATGCTCAAGCAAAAGATCAGAAGCATAAAGATCATTCTCTGAAACATGCTGAAGGTCAGTCTTCCTTGGTTGTGGAGAAAGAATTACCTGCCGTGCTCCTTTCAAAGGGGGAGAAACTGGATATGCTGGAGGAGGAAGAATTCCCAAAGGAAAATGGAGAGCGGCGTAGCAATGGCAATGAAGCCAACTATAGATCTGAGAGAAGTGAAGGGAGGCAGCCTGATGTGATGGATGATCAACCAGGCAAATCTAGGAGTCAAAGCATGAGTATTAGTCCAAAGCGTGAGAGCAGAAGTACAAGCATTAGTCGAAAAAAGAGGTTGAGCAGAAGTCCAAGTCGTAGTAGAAGCCCTCGTGCTCCATTACGGAGGAGTTTGAGCAGGAGTCCAAACAGAAGAAGCATCAGCAGAAGCCCAGCGAGAGGTAGAAAGGGGAAAAGCGTCAGTAGAAGCCCTATGCAATCTCGTGGATATAGAAGTGTCAGTGTAAGCCCTGTTAGATCCCTTTCTCGGAGCAACCTGAGGACATCACCCAGAGCACCATCACGAAGATCGATCAGCAGAAGCCCTGTGATTAATCACAATCATAGAAGTGTCAGTAGAAGCCCTATTAGATCTCGTGATCATAGAAATGTCAGTGTAAGCCCTGCGACATCCCTTTCCCGGAGCCACAAGAGTTCACCCAGAGCACGATCACAAAGATCAATCAGCAGAAGCCCTGTGAGAACACACAATCATAGGAGTGTCAATAGAAGCCCTGTGAGATCTAGTGGTCGGAGAAGTGTCAGTGCAAGCCCTGTAAGACCCCTTTCTCGGAGTCGTAGGAGGAATTCCCCCAGAGCACCATCTAGAAGATCAATCAGTAGAAGCCCAGTGAAAACTGGAAATGCAAGTAGAAGCCCTGTGAGATCTCATGGTCATAGAAGTGTGAGTGCAAGCCCTGTAAGATCGCTTTCTCGGGGCCGTTGGAGGAATTCACCCAGAGCACAATCACGAAAATCAATCAGCAGAAGCCCGGTAAGAGTGTCCAGAAAGAGTTTAAGCAGGAGTCCAGTTAGAACATCTGCCAGAAGCTTGAGCAGAAGTTTGAGCAGAAGCTCTGGCAGAGTCCCTTTAAGAAGCATTAGCCGAAGTCCAGCTAGAGTGCCAAGCAGAGGCAATCGTCGCAGTTATTCTAGAAGTCCTCGTGGTAGGAGTAGGAGCCTGTCAAGAAGTGTGTCGCCTGATGTTTCCCCAAAACGTATCAGAAGGGGAAGAGGTTTCAGTGAACAGTACTCTTACGCCAGAAGGTATAGGACTCCCTCTCGATCTCCTGTGAGGTCGTACCGCTATAATGGAAGAAGTTACCGTGACAGATATTCAGGTTACAGGAGGTACTCCCCAAGGCGTAATAGGAGCCCACTGCCACGTAGAAGAACTCCACCAAGGTTCCGGAGGAGGAGGAGCAGGACACCGTCTGTATCACGCAGCCCACGGTATCGAGGTCGACGATATAGTCGAAGCCGAAGCCGTAGCCCTGTTCGCAGTCGTTCACCTGTTGGTGCATATCGACCTCGTGTTGAGAAGAGCAGGTCTTTGTCCCGGAGTAGAAGTCTATCACGATCTAGGGCGTCAGTGGAATCACAATCTCCAAAAAAGGCGAGCAGGAACAGCAGGTCAGCGTCCCCTTCTGAAAGCCCAGATGCAAAGAAAGGCCTTGTATCTTACGAAGATGGTTCTCCTTATTCAAACTAA 2688 0.4628 MAKKKNCLVFMDVSIDGDPVERMVFELFYDVAPKTAENFRALCTGERGVGPSTGKSLHYKGSFFHRIVKGSIARGGDFVNRNGTGGESIYGSKFPDESPRLKHDAPGLLSMPVADRDSLGSHFIITFKSDPHLDRKHVIFGKLVQGHNILKKIEDVGDEEGLPSVTVKIINCGEHNEDGKKINKSKKGRDGSTETHSPELHRGKRKKSSGDKRKRRKYYSSVSNSSSDSDTKSSESDSDSDSDTSSSYTSSSSDDRRRKRKRSRKDKHRRGKKRDQHRDKRRRKQDKRSKRKSRRELTCHTESDSDNKSGNSSGGESCDAQAKDQKHKDHSLKHAEGQSSLVVEKELPAVLLSKGEKLDMLEEEEFPKENGERRSNGNEANYRSERSEGRQPDVMDDQPGKSRSQSMSISPKRESRSTSISRKKRLSRSPSRSRSPRAPLRRSLSRSPNRRSISRSPARGRKGKSVSRSPMQSRGYRSVSVSPVRSLSRSNLRTSPRAPSRRSISRSPVINHNHRSVSRSPIRSRDHRNVSVSPATSLSRSHKSSPRARSQRSISRSPVRTHNHRSVNRSPVRSSGRRSVSASPVRPLSRSRRRNSPRAPSRRSISRSPVKTGNASRSPVRSHGHRSVSASPVRSLSRGRWRNSPRAQSRKSISRSPVRVSRKSLSRSPVRTSARSLSRSLSRSSGRVPLRSISRSPARVPSRGNRRSYSRSPRGRSRSLSRSVSPDVSPKRIRRGRGFSEQYSYARRYRTPSRSPVRSYRYNGRSYRDRYSGYRRYSPRRNRSPLPRRRTPPRFRRRRSRTPSVSRSPRYRGRRYSRSRSRSPVRSRSPVGAYRPRVEKSRSLSRSRSLSRSRASVESQSPKKASRNSRSASPSESPDAKKGLVSYEDGSPYSN* 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0542 895 MobiDBLite consensus disorder prediction 781 805 - -
Pvu1g0542 895 MobiDBLite consensus disorder prediction 848 876 - -
Pvu1g0542 895 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 173 IPR002130 GO:0000413|GO:0003755
Pvu1g0542 895 MobiDBLite consensus disorder prediction 432 454 - -
Pvu1g0542 895 MobiDBLite consensus disorder prediction 176 895 - -
Pvu1g0542 895 MobiDBLite consensus disorder prediction 466 517 - -
Pvu1g0542 895 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Pvu1g0542 895 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Pvu1g0542 895 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Pvu1g0542 895 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Pvu1g0542 895 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Pvu1g0542 895 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP95 1 388 - -
Pvu1g0542 895 MobiDBLite consensus disorder prediction 176 205 - -
Pvu1g0542 895 MobiDBLite consensus disorder prediction 304 319 - -
Pvu1g0542 895 MobiDBLite consensus disorder prediction 320 335 - -
Pvu1g0542 895 MobiDBLite consensus disorder prediction 257 294 - -
Pvu1g0542 895 MobiDBLite consensus disorder prediction 527 557 - -
Pvu1g0542 895 MobiDBLite consensus disorder prediction 601 691 - -
Pvu1g0542 895 MobiDBLite consensus disorder prediction 398 415 - -
Pvu1g0542 895 Gene3D - 1 175 IPR029000 -
Pvu1g0542 895 MobiDBLite consensus disorder prediction 698 726 - -
Pvu1g0542 895 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 388 - -
Pvu1g0542 895 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Pvu1g0542 895 MobiDBLite consensus disorder prediction 568 590 - -
Pvu1g0542 895 MobiDBLite consensus disorder prediction 350 397 - -
Pvu1g0542 895 SUPERFAMILY Cyclophilin-like 5 176 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0542 Pvu-Chr1 6047983 6055156 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0542 25 170 U-box Gene Family AT5G67530 39.189 4.72e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0542 K09566 - tcc:18588982 516.538