Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0541 ATGGCAAAGAAGAAGAATTCTCTGGTGTTTATGGATGTGTCCATAGATGGGGATCCTGTTGAAAGGATGGTTTTTGAGCTCTTCTATGATGTTGCTCCAAAAACTGCTGAAAATTTCCGTGCATTATGCACAGGAGAAAGCGGTGTTAGTCCAAATACTGGAAAATCACTGCACTACAAGGGGTCTTTCTTCCATCGAGTTGTAAAAGGATCTATCGCCCGGGGTGGAGATTTTGTGAATCGAAATGGCACTGGTGGAGAAAGCATATATGGTTCCAAGTTCCCAGATGAATCACCTAGGCTAAAGCATGATGCTCCCGGCCTTCTATCTATGCCTGTTGCTGTTCGCGACACTCTTGGTTCTCATTTTATCATCACTTTTAAAGCTGATCCCCATCTTGATAGGAAACATGTGATCTTTGGAAAGCTTGTGCAAGGGCATAATATATTGAAGAAAATTGAAGATGTGGGTGATGAAGAAGGACTTCCAAGTGTAACTGTTAAAATAATTAATTGTGGCGAACATAATGAGGATGGAAAGAAGTTGAAGAAATCAAAAAAGGGAAGAAATGGGTTTTGCGAAACCAATAATCATGAACTGCATAGGGGGAAGAACAGAAAATCTTCAGGGGACAAAAGGAAAAGGAGAAAGTATTACACATCAGAATCTGATAGTTCCTCAGATTCAGACACGAAATCTTCCAAAAGTGGTTGTGATTCTGAATCAGATTTATCTTCATCATCTTACACAAGTTCCTCCAGTGATGACAGGCAGAGAAAGAGGAAAAGATCCAGGAAAGACAGGCATAGACGTGGAAAAAGAAGAGACAAACATCGAGAGAAGAGACGAAGGAAACAAGACAAAAAATCAAAGCGTAGATCAAGAAGGGAATTGGCCAGTCATACTGATTCAGACAGTGAAAGTAAGAGTGGCAACAGCTCCGATGGTGATAGTTGTGGTGCTCAACCGAAAGATCAGAAGCTTAAAGAACAATCTCAGAGACATGCTGAAGGTCACTATTCCTTAGTTGTGGAGAAAGAATTGCCTCCCATGCACCTTAACAAGGAGAAACTGGATATGCTAGAGGAAGAAGAATTCCCAAAGAAGAATGAAGAGCAAAGTAGCTATGGCACTAGAGCCAACTATAGATCTGACCGAAGTCAAGGGAGGCAGCCTGACGTGATGGATGATCAACCAGGCAAATCTAGGAGTCCAAGCATGAGTATTAGTCCCCGGAGCGAGAGGAAAAGCCCTAGTTGTCCAAAAAGGAGGTTGAGAAGAAGTCCAAGTGGCAATGGAAGCCCTCGTGTTCCATCACAGAGGAGCTTGAGTCAGAGTCCTGTTAGAAGCACAAGCAAAAGTCCAAACAGAAGAAACATAAGTAGAAGCCCCGTGAGAGGTAGGAAGGGGAGAAGTTTCAGTAGAAGCCCTGTGGGATCTCGCGAACATAGAAGTGTTAGTGCAAGCCCTGTAAGATCCCTTTCTCAGAACCACCAGAGGACTTCACCCAGAGCAGCATCACGCAGATCAATCAGCAGAAGTCCTGGAAGATCCCTTTCTCAGGGTCGCGGGAGGAGTTCACACAGAGTACCATCGCGAACATCAATCAGCAGAAGTCCTGTGAGAAATCACAATCAAAGAAGTATCAGTCGAAGCCCGAGATCTCGTGGTCGGAGAAGTGTGAGTGCAAGTCCGGTAAGATCCCTTTCTCGGAGCCACCAGAGTTCACCCAGAGCATCATCACGAAGATCAATCGGCAAAAGCCCTGTGAGAACACTCAATCATAGAGGTGTCAATAGAAGCCCTCTGAGATCTCGTGGTCGTAGTCATAGAAGTGTCAGTGAAAGCCCTATAAGATCTCTTTCTCAGAGCCGTCAGAGGACTTCACCAAAAGCACAATCACGGAGATCAATCAGTAGAAGCCCTGTGAGAACTGACAATCATAGAAGTGTAAGTAGAAGCCCTGTGAGATCTCATGGTCATAGAAGTGTGAGTGCAAGCCCTGTCAGATCACTTTCTCGGGGCCGCCAGAGGAGTTCATCTAGAGAACCTTCACGAAGATCAATAAGCAGAAGCCCAGTAAAAGTGTCAAGAAAGAGTAGCAGGAGTCCAGTTAGATCACCTGCCAGAAGCTCTGGAAGAGCCCCTTTGAGAAGCCATAGCCGGAGTCCAGTTAGGAGGCCAAGCAGAGTCAATAACCGCAATTATTCTAGGAGTCCACGTGGTAGGAGCTTGTCTAGAAGTCGGTCACCTGATGTTTCCCCGAAACGTATCAGAAGGGGAAGAGGTTTCAGTGAACGATACTCTTATGCTAGAAGATATAGGACTCCCTCTCGATCTCCTGTGAGATCATACCGCTATAATGGAAGAAATGACCGTGGCAGATATTCAGGTTACAGAAGGTACTCCCCTAGGCGTAACAGGAGCCCACCACCACGCAGAAGAACCCCATCAAGATACCGGAGTAGGAGGAGCAGGACACCATCTGTATCACGGAGCCCACGCCATAAGGGTCGACGATACAGTCGAAGTCCAAGCCGTAGCCCTGTTCGCAGTCGTTCACCTGTGGGCACATATCGACCTCGTGTTGAGAGGAGCAGGTCTTTGTCCCGGAGCAGGAGTCCATCACGCTCCAGGAATTCATTGGAATCACAATCTCCACGAAAGAAGAGCAGGTCAAGGTCCCAAAGCTCAGATGGAAAGAAAGGCCTTGTATCTTACGGAGATGGTTCTCCAGACTCAGGTTAA 2748 0.4614 MAKKKNSLVFMDVSIDGDPVERMVFELFYDVAPKTAENFRALCTGESGVSPNTGKSLHYKGSFFHRVVKGSIARGGDFVNRNGTGGESIYGSKFPDESPRLKHDAPGLLSMPVAVRDTLGSHFIITFKADPHLDRKHVIFGKLVQGHNILKKIEDVGDEEGLPSVTVKIINCGEHNEDGKKLKKSKKGRNGFCETNNHELHRGKNRKSSGDKRKRRKYYTSESDSSSDSDTKSSKSGCDSESDLSSSSYTSSSSDDRQRKRKRSRKDRHRRGKRRDKHREKRRRKQDKKSKRRSRRELASHTDSDSESKSGNSSDGDSCGAQPKDQKLKEQSQRHAEGHYSLVVEKELPPMHLNKEKLDMLEEEEFPKKNEEQSSYGTRANYRSDRSQGRQPDVMDDQPGKSRSPSMSISPRSERKSPSCPKRRLRRSPSGNGSPRVPSQRSLSQSPVRSTSKSPNRRNISRSPVRGRKGRSFSRSPVGSREHRSVSASPVRSLSQNHQRTSPRAASRRSISRSPGRSLSQGRGRSSHRVPSRTSISRSPVRNHNQRSISRSPRSRGRRSVSASPVRSLSRSHQSSPRASSRRSIGKSPVRTLNHRGVNRSPLRSRGRSHRSVSESPIRSLSQSRQRTSPKAQSRRSISRSPVRTDNHRSVSRSPVRSHGHRSVSASPVRSLSRGRQRSSSREPSRRSISRSPVKVSRKSSRSPVRSPARSSGRAPLRSHSRSPVRRPSRVNNRNYSRSPRGRSLSRSRSPDVSPKRIRRGRGFSERYSYARRYRTPSRSPVRSYRYNGRNDRGRYSGYRRYSPRRNRSPPPRRRTPSRYRSRRSRTPSVSRSPRHKGRRYSRSPSRSPVRSRSPVGTYRPRVERSRSLSRSRSPSRSRNSLESQSPRKKSRSRSQSSDGKKGLVSYGDGSPDSG* 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0541 915 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 173 IPR002130 GO:0000413|GO:0003755
Pvu1g0541 915 MobiDBLite consensus disorder prediction 728 749 - -
Pvu1g0541 915 MobiDBLite consensus disorder prediction 800 846 - -
Pvu1g0541 915 MobiDBLite consensus disorder prediction 479 548 - -
Pvu1g0541 915 MobiDBLite consensus disorder prediction 349 372 - -
Pvu1g0541 915 MobiDBLite consensus disorder prediction 296 310 - -
Pvu1g0541 915 Gene3D - 1 175 IPR029000 -
Pvu1g0541 915 MobiDBLite consensus disorder prediction 322 342 - -
Pvu1g0541 915 MobiDBLite consensus disorder prediction 883 897 - -
Pvu1g0541 915 MobiDBLite consensus disorder prediction 224 253 - -
Pvu1g0541 915 MobiDBLite consensus disorder prediction 555 599 - -
Pvu1g0541 915 MobiDBLite consensus disorder prediction 432 461 - -
Pvu1g0541 915 MobiDBLite consensus disorder prediction 373 388 - -
Pvu1g0541 915 SUPERFAMILY Cyclophilin-like 4 176 IPR029000 -
Pvu1g0541 915 MobiDBLite consensus disorder prediction 261 295 - -
Pvu1g0541 915 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Pvu1g0541 915 MobiDBLite consensus disorder prediction 657 675 - -
Pvu1g0541 915 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Pvu1g0541 915 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Pvu1g0541 915 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Pvu1g0541 915 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Pvu1g0541 915 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Pvu1g0541 915 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP63 ISOFORM X1 1 334 - -
Pvu1g0541 915 MobiDBLite consensus disorder prediction 177 206 - -
Pvu1g0541 915 MobiDBLite consensus disorder prediction 750 773 - -
Pvu1g0541 915 MobiDBLite consensus disorder prediction 401 415 - -
Pvu1g0541 915 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 334 - -
Pvu1g0541 915 MobiDBLite consensus disorder prediction 690 718 - -
Pvu1g0541 915 MobiDBLite consensus disorder prediction 177 915 - -
Pvu1g0541 915 MobiDBLite consensus disorder prediction 614 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0541 Pvu-Chr1 6031467 6039713 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0541 25 170 U-box Gene Family AT5G67530 38.514 1.41e-18 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0541 K09566 - gmx:100801588 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0541 1 6031467 6039713 Pvu1g0541 1 6031467 6039713 ECH