Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0540 ATGGCGAAAAAGAAGAATTCTCTGGTGTTTATGGATGTGTCCATAGATGGGGATCCTGTTGAAAGGATGGTTTTTGAGCTTTTCTATGATGTTGCTCCGAAGACTGCTGAAAATTTCCGTGCATTATGTACAGGAGAAAGGGGAGTTGGTCCAAATACTGGAAAATCACTGCACTACAAGGGTTCTTTCTTCCATCGAATTGTGAAAGGCTCCATTGCCCGGGGTGGTGATTTTGTCAATCGAAATGGGACTGGCGGAGAAAGCATATATGGTTCCAAGTTCCCAGATGAATCACCTAGGCTAAAGCATGATGCTCCAGGCCTTCTTTCAATGCCAGTTGCTGATCGTGACACTCTTGGTTCTCATTTTATGATCACTTTTAAAGCTGATCCCCATCTTGATAGGAAACATGTAGTCTTTGGCAAGCTTGTACTAGGACATGACATATTGAAGAAAATTGAAGATGTGGGTGATAAAGAAGGACTTCCAAGCGTAACTGTTAAAATAATTAATTGTGGTGAACATAATGAGGATGAAAAGAAGATAAATAAATCAAAAAAGGGAAGAGATGGATCTTCTGAAACCAATAGTCATGAACTTCCTAAGGGAAAGCACCGAAAATCTTCAGGTGACAAAAGGAAAAGGAGAAAGTACTACTCTTCAGAATCTGATAGTTCCTCAGATTCAGACACAAAATCTTCAGAAAGTGACAGTGATTCTGACTCTGATATATCTTCATCATCTTACACAAGTTCCTCTAGCGATGATAGACGGAGAAAGAGAAAGAGGTCTAGGAAAGATAAACATAGGCGTGGAAAAAGAAGAGATAAACACAGAGAAAAGAGACGAAGGAAACAAGATAAAAGATCAAAGCGTAGATCAAGAAGGGAATTGCCCAGTCATACTGATTCAGATAGTGAGAGTAAGAGCAACAACTTCTCTGATAGTGAAAGTTCTGGTGCTGAAGTGAATGATCAGAATCATGAAGACCATTCTCAAAGACATGCTGAAGGTCAGTCTTCCTCAGTTGTCGGGAAAGAACTACCACCGATGCACCCTAATAAGAGGGAGAAACTGGATATTCAAGAAGAGGAAGAATTACCAAAGGAAAATGGAGAGCGGCGTAGCAATGGCACTGGAGCCAACTATAGATCTGAAAGAAGTGAAGGGAGGCAGCCTGATGTGATGGATGATCAACCAGACAAATCTAGGAGTCAAAGCACGAGTATTAGTCCCAGGCGCAAGAGCAAAAGCCTAAGCATTAGTCCAAAAAGGAGGCTGAACAGAAGTCCAAGTGGCAGTAGAAGTCCTCATTCTCCATTACAGAGGAGTTTGAGCCAGAGTCCTGTTAGAAGCACAAGGAGGAGTCCAAACAGAAGAAGCATCAGCAGAAACCCAATGAGAGGTAGGAAGGGTAGAAGTATCAGCAGAAGCTCTGTGAGATCTCATGGACATCGAAGTGTCAGCACAAGCCCTGTAAGACCCCTTTCTCGGAGCTACCAAAAGACTTCACCAAGAACATCATTACGAAGATCGATCAGCAGAAGCCCTACGATATCTCCTGGTCAAAGAAGTGTCAGTGCAAGCCCAGGAAGATCCCCTTCTCGTAGCCAAAGGAGGAGTTCACCATCACGAAGATCAATCAGCAGAAGCCCAGTGAGAAATCACCATCATAGAAGTGTCAGTAGAAGCTCTGTAAGATCTCACGGTCGTAGAAGGGACAGTGTAAGCCCTGTAAGATCCCTTTCTCCAAGCCATAGGAAATCACCTAGAGCAAAATCTAGAAGATCAATCAGCAGAAGCCCTGTCGGAACTCGCAACTATAAAAGTGTCAATAAAGGCACCTTGAGATCTCGTGGTAATAGAACTAGCAGTGCAAGCCCTGTAAGATCCCTTTCTCGAAGCGGTCGTAGGAGTTCACCCAGAGCACCTTCACAAAGATCAATCAGTAGAAGCCCTGTGAAAACTGACAATCGTAGAAGTATAAGTAGAAGCCCCTTGCGATCTCGTGGTCACAGAAGTGTGAGTGCTAGCCCTGTTAGATTGCTTTCATCGGACCGGCGAAGGAGTTCACCCAGAGCATCATCACGAAGATTGATCAGTAGAAGCCCAGTAAGAGTGTCAAGAAGGAGTTTAAGCAGGAGTCCTGTTCGATCGTCTGCCAGAAGCTTGAGCAGAAGCTCTGGCAGAGTCCCTTTAAGAAGCCATAGCCGGAGTCCAGTTAGAGGGCCAAGCAGAGTCAATCACCGCAGTTATTCTAGGAGTCCTCGTGGTAGGAGCTTGTCTAGAAGTCGGTCACCTGATGTTTCCCCGAAACTAATCAGAAGGGGAAGAGGTTTCAGTGAACGATACTCTTATGCTAGAAGGTATAGGACTCCCTCTCGATCTCCTGTGAGATCATACCGTTATAATGGAAGAAATGACCGTGACAGATATTCAGGTTACAGAAGGTACTCCCCTAGGCGTAACAGGAGCCCACCACCACGCAGAAGAACCCCATCAAGGTTCCGGAGTAGGAGGAGCAGGACACCATCTGTATCACGGAGCCCACGTTATAGAGGTCGACGATACAGTCGAAGCCCTGTTCGGCGTTCACCTGTGGGCACATATCGACCTCGTGTTGAGAGGAGCAGATCTTTGTCCCGTAGTAGCAGGTCTTTGTCCCGGAGCAGGAGTCCATCAGGATCCAGGAATTCAGTGGAGTCACAATCTCCAGGAAAGAAGAGCAGGTCAAGGTCCCAAAGCTTAGATGGAAAGAAAGGCCTTGTATCTTACGGAGATGGTTCTCCAGATTCAAGCTAA 2802 0.4529 MAKKKNSLVFMDVSIDGDPVERMVFELFYDVAPKTAENFRALCTGERGVGPNTGKSLHYKGSFFHRIVKGSIARGGDFVNRNGTGGESIYGSKFPDESPRLKHDAPGLLSMPVADRDTLGSHFMITFKADPHLDRKHVVFGKLVLGHDILKKIEDVGDKEGLPSVTVKIINCGEHNEDEKKINKSKKGRDGSSETNSHELPKGKHRKSSGDKRKRRKYYSSESDSSSDSDTKSSESDSDSDSDISSSSYTSSSSDDRRRKRKRSRKDKHRRGKRRDKHREKRRRKQDKRSKRRSRRELPSHTDSDSESKSNNFSDSESSGAEVNDQNHEDHSQRHAEGQSSSVVGKELPPMHPNKREKLDIQEEEELPKENGERRSNGTGANYRSERSEGRQPDVMDDQPDKSRSQSTSISPRRKSKSLSISPKRRLNRSPSGSRSPHSPLQRSLSQSPVRSTRRSPNRRSISRNPMRGRKGRSISRSSVRSHGHRSVSTSPVRPLSRSYQKTSPRTSLRRSISRSPTISPGQRSVSASPGRSPSRSQRRSSPSRRSISRSPVRNHHHRSVSRSSVRSHGRRRDSVSPVRSLSPSHRKSPRAKSRRSISRSPVGTRNYKSVNKGTLRSRGNRTSSASPVRSLSRSGRRSSPRAPSQRSISRSPVKTDNRRSISRSPLRSRGHRSVSASPVRLLSSDRRRSSPRASSRRLISRSPVRVSRRSLSRSPVRSSARSLSRSSGRVPLRSHSRSPVRGPSRVNHRSYSRSPRGRSLSRSRSPDVSPKLIRRGRGFSERYSYARRYRTPSRSPVRSYRYNGRNDRDRYSGYRRYSPRRNRSPPPRRRTPSRFRSRRSRTPSVSRSPRYRGRRYSRSPVRRSPVGTYRPRVERSRSLSRSSRSLSRSRSPSGSRNSVESQSPGKKSRSRSQSLDGKKGLVSYGDGSPDSS* 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0540 933 MobiDBLite consensus disorder prediction 322 336 - -
Pvu1g0540 933 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Pvu1g0540 933 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Pvu1g0540 933 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Pvu1g0540 933 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Pvu1g0540 933 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Pvu1g0540 933 MobiDBLite consensus disorder prediction 215 239 - -
Pvu1g0540 933 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 173 IPR002130 GO:0000413|GO:0003755
Pvu1g0540 933 MobiDBLite consensus disorder prediction 296 310 - -
Pvu1g0540 933 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP63 ISOFORM X1 1 347 - -
Pvu1g0540 933 MobiDBLite consensus disorder prediction 350 373 - -
Pvu1g0540 933 MobiDBLite consensus disorder prediction 822 846 - -
Pvu1g0540 933 MobiDBLite consensus disorder prediction 741 767 - -
Pvu1g0540 933 MobiDBLite consensus disorder prediction 668 685 - -
Pvu1g0540 933 MobiDBLite consensus disorder prediction 596 652 - -
Pvu1g0540 933 MobiDBLite consensus disorder prediction 802 817 - -
Pvu1g0540 933 MobiDBLite consensus disorder prediction 387 401 - -
Pvu1g0540 933 MobiDBLite consensus disorder prediction 177 206 - -
Pvu1g0540 933 MobiDBLite consensus disorder prediction 883 911 - -
Pvu1g0540 933 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Pvu1g0540 933 Gene3D - 1 175 IPR029000 -
Pvu1g0540 933 MobiDBLite consensus disorder prediction 696 734 - -
Pvu1g0540 933 MobiDBLite consensus disorder prediction 402 463 - -
Pvu1g0540 933 MobiDBLite consensus disorder prediction 177 933 - -
Pvu1g0540 933 MobiDBLite consensus disorder prediction 481 549 - -
Pvu1g0540 933 SUPERFAMILY Cyclophilin-like 4 178 IPR029000 -
Pvu1g0540 933 MobiDBLite consensus disorder prediction 769 789 - -
Pvu1g0540 933 MobiDBLite consensus disorder prediction 464 480 - -
Pvu1g0540 933 MobiDBLite consensus disorder prediction 258 295 - -
Pvu1g0540 933 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 347 - -
Pvu1g0540 933 MobiDBLite consensus disorder prediction 550 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0540 Pvu-Chr1 6020825 6027749 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0540 25 170 U-box Gene Family AT5G67530 39.189 2.92e-19 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0540 K09566 - gmx:100801588 387.111