Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0539 ATGGGGAGAAGACCTGCAAGGTGTTATAGGCAAATTAAAAATAAGCCATACCCCAAGTCCCATTTCTGTCGTGAGAAGGAAAATGTGTCGAGTGAGGCATTGGAAGTTGCCCGCATTGCTTGCAACAAGTACATGGCAAAGTTTGCTGGAAAGGATGTTTTCCACTTGAGAGTTAGGGTGCACCCATTCCACGTTCTTAGGATGAACAAGATGCTTTCATGTGCTGGAGCTAATAGGCTCCAAACTGGAATGAGAGGTGCTTTTGGAAAGCCACAGGGTACTTGTGCTAGAGAGGCTCTTCGCCGTGCCAAGTTCAAATTCCCTGGTCGTCAAAAGATTATTGTTAGCAAGAAATGGGGCTTCACTAAGTTTAGCCGTTCTGATTATCTGAAGTTCAAGTCAGACAACAGAATTGTTGCAGATGGTGTAAATGCAAAGATTCTTGGGAACCATGGACCATTGGCCAACCACCAGCATGGAAGAGCTTTCCTTGAGAGTGCTACTGCTTAA 510 0.451 MGRRPARCYRQIKNKPYPKSHFCREKENVSSEALEVARIACNKYMAKFAGKDVFHLRVRVHPFHVLRMNKMLSCAGANRLQTGMRGAFGKPQGTCAREALRRAKFKFPGRQKIIVSKKWGFTKFSRSDYLKFKSDNRIVADGVNAKILGNHGPLANHQHGRAFLESATA* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0539 169 Pfam Ribosomal protein L16p/L10e 24 97 IPR016180 GO:0003735|GO:0005840|GO:0006412
Pvu1g0539 169 PANTHER 60S RIBOSOMAL PROTEIN L10 96 166 IPR001197 GO:0003735|GO:0005840|GO:0006412
Pvu1g0539 169 PANTHER 60S RIBOSOMAL PROTEIN L10 1 24 IPR001197 GO:0003735|GO:0005840|GO:0006412
Pvu1g0539 169 PANTHER 60S RIBOSOMAL PROTEIN L10 25 98 IPR001197 GO:0003735|GO:0005840|GO:0006412
Pvu1g0539 169 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 24 - -
Pvu1g0539 169 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 25 98 - -
Pvu1g0539 169 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 96 166 - -
Pvu1g0539 169 CDD Ribosomal_L16_L10e 25 114 IPR016180 GO:0003735|GO:0005840|GO:0006412
Pvu1g0539 169 SUPERFAMILY Ribosomal protein L16p/L10e 4 121 IPR036920 GO:0003735|GO:0005840|GO:0006412
Pvu1g0539 169 Gene3D Ribosomal protein L10e/L16 97 126 IPR036920 GO:0003735|GO:0005840|GO:0006412
Pvu1g0539 169 Gene3D Ribosomal protein L10e/L16 7 96 IPR036920 GO:0003735|GO:0005840|GO:0006412
Pvu1g0539 169 Gene3D - 127 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0539 Pvu-Chr1 6004964 6005600 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0539 1 168 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 61.364 8.94e-89 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0539 K02866 - gmx:100305619 292.352