Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0537 ATGGATTCTCCAGAACCTTTCAAGAACAACAACAATTCACCGGATTCCCCTCAAGAAGAATCCCCTTTTTGTAGATATGTAAGCTCTTTATCTCCAATAAACATCAAGGCTTCTCATAGCACACGAAGTTTTGTAGGGCTCAGTTCTCCACCCCTTGTATTCAAGTCTCCACGTATTAGTCACCGTGCAACACAGTTCATGCAAAGGTCACAAGGTAATGAGTCAGTCTCGGAAGTGCGATCTCAAAGTGAAAATGGAGGCAACATTCTTGGTGAAGCTTTTGGGTATTACTTGAAATCAGATTCTCATCAGCCACTGCCAGAGAGGTTTATAACTGACACTCAAAAGGTTTTTGACCCCAAGAATGATGCAAATATGCAACACTACGGTGGACATTTCTCTATTTATAAATATTTGGCTGATCCCGGGGATATTGATCAAATGTATTCAGCTGACCAAGATGTGGAACAACAATCTACAGATGCAGCTGAAACATCACTTAGTTACCCAACTCAGTCAAATATATTAAATATTGGCAGGAAAGAGGGTCTTGGTGATAAAGCAGAAGAATCTTTGCCTCTGTCAGAGGATTCTAACAAGGTTCATCAACAGATGCCAGTATCCGGTGAAGAACCTAAAAGGATGGAACGGGAGCAAAGTGATGTTAAGAATCGATACAGTCATGATCCACTTCTTCCCCAGGCTACTCTAAAGTCCAATGATGTTGGAAGACGCCGCCTACAGTTTGAGGAAGGAGCTTCCAGTGCTCTTGAAAGTAACAAGTCTCGTGAGAAACTGAATGCAACTTCCTCCTTGTATCCTCAGCAAGGTTGTGGAAACTTACCTTTGCCAGGTTCCAAGCCATCAGGTATTGGGTTGCATTTAAATAGCATCGTAAATGCTATGCCAACTAATGAGGCTGCAACTACGGGTGTGAGATTACCAGATACTTCACCAAGGATGAAATCCACATCCTCAGAAAGGTTGCAAAGAAGGGAGATAATAAAGGGATCCATGCTTTCGTGCAATGTCAATGCGGAATCATCAGTTGATACTAGAACTGAGAGCCATGAAATTGATGCTACAGATGCTGGAAACTCCGAGGAATTCAACAAATCTCCTAGCCCCTGCAAGAAAAAGAAGAAAACATCAGTCGCTGGTAGTCAAGATGGCTGTAAAGGGTGCCGCTGTAAGAAGAGTAAATGTATAAAACTTTACTGTGAGTGTTTTAATGCCGGAGTCTACTGCAATGGCCCTTGTGGTTGCCAAGACTGCTTAAACAGACCAGAATATAAAGACACGGTTATGGAGTCTAGACAACAAATTGAATCCCGCAATACGGAAAATTCGGCAAGGCTCAAAAGAGGTTGCAATTGCAAAAGATCTACATGTCTGAAAAAATATTGCGAATGTTATCAGGCTAAAGTTGGATGCTCTAGTGGATGTGGATGTCAGGGATGCAAGAATTCATATGGCAAGATAGAAGATTATGTGGCGGTTCAACATACCTGGAATATAGAAACGATGAGTGGAAATAATCAGGAAATGGTGGCAAGCGAGACAGATTATGATCTACGGCGACTCTCACCTATAACACCATCATTGCAATGCTATGACCAAGGCAAGGAGGCTGCAAAATCCAGAGTTGTTAACATGTTTGCATCTTGTTCAAACAACACTCAATCTTCTGAAGGTGACGAGACTGTGGTAACAGAGATGCTACGAAATGATCCTTATGATTCGGGAATTGAATGCAACAATGATATGTTACTTCAGGACACTCTTCCATCCAATCCTCCATTTTCATATGCAGCTAATCGGTGGAAAACTGTTTCTCCATCCCCATTCTCACGCGAACCTATTCGATCAGATTGCACGGTCTTTAACATGATAGTACATGAAATGCATGAAGCTTCAACTCTCATGACGTCTGTGGAAGTAAATTCCCCAAGTCAAAAACGAGTTTCTCCTCCCCAGAGTGGTCTTGTCTCTGGAGGATTGAGAGGAGGCAGGAGAATTATATTGCAATCTGTTCCTTCTTTCCCTCCATTGTCTTCTTGCGTTGATTCCAAAAGCAATAACAACGAAGATCTGGGTAACAGTCAGAGCAAGGATCCACATTCTCCGAGCAGATGA 2136 0.4228 MDSPEPFKNNNNSPDSPQEESPFCRYVSSLSPINIKASHSTRSFVGLSSPPLVFKSPRISHRATQFMQRSQGNESVSEVRSQSENGGNILGEAFGYYLKSDSHQPLPERFITDTQKVFDPKNDANMQHYGGHFSIYKYLADPGDIDQMYSADQDVEQQSTDAAETSLSYPTQSNILNIGRKEGLGDKAEESLPLSEDSNKVHQQMPVSGEEPKRMEREQSDVKNRYSHDPLLPQATLKSNDVGRRRLQFEEGASSALESNKSREKLNATSSLYPQQGCGNLPLPGSKPSGIGLHLNSIVNAMPTNEAATTGVRLPDTSPRMKSTSSERLQRREIIKGSMLSCNVNAESSVDTRTESHEIDATDAGNSEEFNKSPSPCKKKKKTSVAGSQDGCKGCRCKKSKCIKLYCECFNAGVYCNGPCGCQDCLNRPEYKDTVMESRQQIESRNTENSARLKRGCNCKRSTCLKKYCECYQAKVGCSSGCGCQGCKNSYGKIEDYVAVQHTWNIETMSGNNQEMVASETDYDLRRLSPITPSLQCYDQGKEAAKSRVVNMFASCSNNTQSSEGDETVVTEMLRNDPYDSGIECNNDMLLQDTLPSNPPFSYAANRWKTVSPSPFSREPIRSDCTVFNMIVHEMHEASTLMTSVEVNSPSQKRVSPPQSGLVSGGLRGGRRIILQSVPSFPPLSSCVDSKSNNNEDLGNSQSKDPHSPSR* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0537 711 MobiDBLite consensus disorder prediction 308 328 - -
Pvu1g0537 711 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 4 1 696 - -
Pvu1g0537 711 SMART CXC_2 390 431 IPR033467 -
Pvu1g0537 711 SMART CXC_2 452 493 IPR033467 -
Pvu1g0537 711 MobiDBLite consensus disorder prediction 182 196 - -
Pvu1g0537 711 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 696 IPR044522 GO:0003700
Pvu1g0537 711 MobiDBLite consensus disorder prediction 351 365 - -
Pvu1g0537 711 MobiDBLite consensus disorder prediction 680 711 - -
Pvu1g0537 711 MobiDBLite consensus disorder prediction 1 23 - -
Pvu1g0537 711 MobiDBLite consensus disorder prediction 153 178 - -
Pvu1g0537 711 ProSiteProfiles CRC domain profile. 391 492 IPR005172 -
Pvu1g0537 711 MobiDBLite consensus disorder prediction 351 389 - -
Pvu1g0537 711 MobiDBLite consensus disorder prediction 207 225 - -
Pvu1g0537 711 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 393 428 IPR005172 -
Pvu1g0537 711 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 455 490 IPR005172 -
Pvu1g0537 711 MobiDBLite consensus disorder prediction 308 324 - -
Pvu1g0537 711 MobiDBLite consensus disorder prediction 646 667 - -
Pvu1g0537 711 MobiDBLite consensus disorder prediction 153 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0537 Pvu-Chr1 5978242 5983033 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0537 290 507 CPP Transcription Factor Family AT3G22780 39.506 1.40e-42 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Pvu1g0537 TCR 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0537 K21776 - gmx:547664 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0537 1 5978242 5983033 Pvu1g0537 1 5978242 5983033 ECH
Pvu1g0537 1 5978242 5983033 Pvu9g1437 9 20451693 20454202 PCT