Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0507 ATGGGGAAGCCGGCGGGTAAAAAGAAGGATCTGGAGTTTCCCGCTCCCGCCACCAAGCCCAACGGTCACCACCCGTCAAAATCATGGGAGGAAAAACGCGGGGCGGTGGCGGCGGCGTCGGCTTCGTCGGCGTCGTCGAAGACGTTGGACGAGGACACGGCGATGTTCATAAACATGTCGCAGGAGCTTCGAGAGGAAGGGAACAGGTTGTTTCACAAGAAGGACAACGAGGGAGCGATGCTGAAGTACGAAAAGGCCCTCAAGCTTCTGCCGCGGAACCACATCGACGTGGCGCACCTCCACACCAGCATGGCCATGTGCTACATGCAGCTGGGGCTGGGTGAGTTTCCGCGCGCCATCAGCGAGTGCAACATGGCGCTGCAGGTGTCGCCGCGCTACACGAAGGCGCTGCTGAGGCGGGCCAAGTGCTACGAGGCGCTGAACCGCGTGGACCTGGCGATGCGCGACGTGCGCGTGGTGCTGAATTTGGAGCCCAATAACTCGACGGCGCTGGAGGTTTTGGATAGCCTGAGGGAGACGGTGGAGGAGAAGGGGATTGTGATTGACGAGACGGAGATAGCCCTCGCGGCGCTGCAGCAGCATCCGGAGCCGCCTTCTTCGCGGCTGAGGAAGGTGGTCAGGGAGAAGATCAAGAAGAATAAGAAGGAAATCAAGGGCGAGGATGAGGGAAAAGCGAAAAAGGTTATCGTTGAAGAGAAGGTTAAGGTTGATAATGTTAGAAAAAAGGAGAAAGAGAAATTGGGGAAAGTAGAGAAGGAGAAATTGGAGAAAGTGGAGAAGGGGAAATTGGAGAAAGTGGAGAAGGGGAAATTGGCGAAGGAAGATAAAGGGAAATTGGGGAGGGAAGAGAAAGGGAAATTGGGGAAAGAAGAAAAAGGTGGTGTTACTAGGACTGTGAAGTTGATATATGGAGAGGATATTAGATGGGCACAATTGCCTGTGAATTGTGGAATGAGGTTGGTGAGGGATGTGATAAGGGACAGGTTTCCTGGGTTGAAGGGTGTTCTTGTGAAGTATAAGGATAGGGAGGGTGATTTGGTTACTATAACTAGTACTTCTGAATTGAGGCTGGCTGAGACTTGTCATGTTCTTGGGTCGATTCGGCTTTATGTGACGAAGGTTGAGCCGGAAGAGGAGCCATTTTATGATGATGGGGTTGTGGCGGAAGGTGGGAAAGTGGTTGAGAATGGGAATGGGGAAGTGGGGAAGGGGGGGAGTAGTACTGTGGGGAAGGGGGGGAGTAGTACTGTGGAGGATTGGCTTGTGCAGTTTGCTAGGCTGTTTAAGAATCATGTTGGGTTTGATTCTGATGCGTATTTGGATATTCATGGGATTGGGATGAAGTTGTATTCGGAGGCCATGGAGGATTCAGTGACAACCGAGGCTGCTCAGGAGCTGTTTGAGATTGCTGGGGATAGGTTTCAGGAGATGGCGGCTTTGGCTTTGTTCAATTGGGGGAGTGTGCATATGTCAAGGGCTAGGAAGAGGGTGAGTTTTCCGGAGGATGGATCAAGGGATTCTTCGTTTGAGTGTGTTCAAACAGCTTATGAATGGGCTCAGAAGGAGTACATGAAAGCAGAGAAGAGATTTGGAGAAGCTGTGAAGATCAAACCGGATTTTTATGAAGGGCTTCTTGCTTTGGGGCATCAGCAATTTGAGCAAGCAAGGCTGTGCTGGTGTTTATTGGCTGCGAACGAGAAGGATTTAGAAGTCAGACATTCGGATGAGGTTCTGGAGCTCTATAACAGGGCTGAGGACAACATGGAGAAAGGCATGATGATGTGGGAGGAGTTGGAGGAGCGGCGATTGAATGGACTGTCCAAATCGGATAAGTATAAAGAGCAGCTAGAGAAAATAGGGTTGCATGGTATTTTCAGGGATGTTTCTTCTGATGAAGCTGATGAACAGGCTGCAAGGATGAGGTTGCAAATATATCTTTTATGGGGCACTTTGTTGTATGAGCGTTCTGTTGTGGAGTATAAGCTAGGCCTGCCAACATGGGAAGAATGTGTAGAGGTTGCAGTTGAAAAATTTGAACTTGCTGGAGCTTCTACAACTGATATTGGGGTCATGATAAAGAACCATTGTTCTAATGAAACGGCAATGGAAGGGTTCAAAATTGATGAGATAGTGCAAGCTTGGAATGAGATGTATGATGGGTGGCAGTTTGATGTCCCATCATTTCGACTTGAGCCGTTGTTCCGTCGGCGTGTTCCAAAACTCCATTACATACTGGAGCAATTTTGA 2268 0.4982 MGKPAGKKKDLEFPAPATKPNGHHPSKSWEEKRGAVAAASASSASSKTLDEDTAMFINMSQELREEGNRLFHKKDNEGAMLKYEKALKLLPRNHIDVAHLHTSMAMCYMQLGLGEFPRAISECNMALQVSPRYTKALLRRAKCYEALNRVDLAMRDVRVVLNLEPNNSTALEVLDSLRETVEEKGIVIDETEIALAALQQHPEPPSSRLRKVVREKIKKNKKEIKGEDEGKAKKVIVEEKVKVDNVRKKEKEKLGKVEKEKLEKVEKGKLEKVEKGKLAKEDKGKLGREEKGKLGKEEKGGVTRTVKLIYGEDIRWAQLPVNCGMRLVRDVIRDRFPGLKGVLVKYKDREGDLVTITSTSELRLAETCHVLGSIRLYVTKVEPEEEPFYDDGVVAEGGKVVENGNGEVGKGGSSTVGKGGSSTVEDWLVQFARLFKNHVGFDSDAYLDIHGIGMKLYSEAMEDSVTTEAAQELFEIAGDRFQEMAALALFNWGSVHMSRARKRVSFPEDGSRDSSFECVQTAYEWAQKEYMKAEKRFGEAVKIKPDFYEGLLALGHQQFEQARLCWCLLAANEKDLEVRHSDEVLELYNRAEDNMEKGMMMWEELEERRLNGLSKSDKYKEQLEKIGLHGIFRDVSSDEADEQAARMRLQIYLLWGTLLYERSVVEYKLGLPTWEECVEVAVEKFELAGASTTDIGVMIKNHCSNETAMEGFKIDEIVQAWNEMYDGWQFDVPSFRLEPLFRRRVPKLHYILEQF* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0507 755 CDD PB1 305 378 - -
Pvu1g0507 755 SUPERFAMILY TPR-like 60 563 IPR011990 GO:0005515
Pvu1g0507 755 SMART tpr_5 134 167 IPR019734 GO:0005515
Pvu1g0507 755 SMART tpr_5 60 93 IPR019734 GO:0005515
Pvu1g0507 755 SMART tpr_5 98 133 IPR019734 GO:0005515
Pvu1g0507 755 SMART tpr_5 514 547 IPR019734 GO:0005515
Pvu1g0507 755 ProSiteProfiles PB1 domain profile. 303 381 IPR000270 GO:0005515
Pvu1g0507 755 ProSiteProfiles TPR repeat profile. 134 167 IPR019734 GO:0005515
Pvu1g0507 755 PANTHER PROTEIN PHOX4 1 754 - -
Pvu1g0507 755 MobiDBLite consensus disorder prediction 1 46 - -
Pvu1g0507 755 Gene3D - 296 380 - -
Pvu1g0507 755 Gene3D Tetratricopeptide repeat domain 57 185 IPR011990 GO:0005515
Pvu1g0507 755 Pfam PB1 domain 303 379 IPR000270 GO:0005515
Pvu1g0507 755 PANTHER PROTEIN CLMP1 1 754 IPR044517 -
Pvu1g0507 755 SMART PB1_new 303 381 IPR000270 GO:0005515
Pvu1g0507 755 ProSiteProfiles TPR repeat profile. 60 93 IPR019734 GO:0005515
Pvu1g0507 755 SUPERFAMILY CAD & PB1 domains 303 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0507 Pvu-Chr1 5495888 5500021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0507 50 167 Calmodulin-binding Proteins AT3G25230 28.346 2.13e-07 52.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu1g0507 1 5495888 5500021 Pvu9g0935 9 14117685 14122459 PCT