Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0502 ATGTGGAGAGAGAGCGCAGTGTTGGTGGTACTGCTACTTCTACTCCACCATATTTCTGCTACCAAGGATGACCAAGAACACGTTTGTCCTCCTTCTTCCTGTGGAAATATCACCAACATCAGCTATCCATTTCGATTAAAAGGCGACCCAGAAGAGTGTGGTGACAAAAGGTATGAGCTTGGTTGTGAGAATAATGTTACGGTGTTGTATCTGTACTCTGCACAATATCATGTGAAGTCAATCAACTACAACAACTACACGGTGAGAGTGGTTGATCCTGCTCTTCAACACCATAATCTCTCCTCCCTTCCTCTCCGTTTCCTCTCTCGCTCCAATTTCTCTGACACTTACACTTACACTTCATTTTACGACCCGGGTCCATACCAAGCCAGTTTTGTCTATGAAAATGGGGAATCTCTGACGTTCGAGCATATAGTGTTCGTGAATTGTAACCATTCGGTGAGAGAGAAAGAGAAGTATGTGGAGATTGGAGAGTGGGTGAAGTGGGAGGGGAAGGGGTATGCATATTCAATTGGTGGAGACCTAAAAGCAGAGGACTTAGAAGTTGGGTGTGAGGTAAAGCTTGTTGCTCCCACTTCTCTTTCCACTTTCGATAACCATTCTTACACTTCCATGCACACCGCACTCGCCTATGGATTCGAGATTTCATGGATACAAGTCGCCTGTCAGAAACATTGTCCAGATGATGATAGCTATTGCTATGTCGACTCTTCTAACCAGAAGCTTCAATGCATCAAAGGATGGGCTTACAAAGTTTTGTTTGGATTGCCATTCATAATTGTTATTTTTATATATAAATGGAGAAAAAGACATATGTCACTGTATGAAAATATTGAAAATTATCTTGAACAAAATAGCTTGGCACCTATTAGATACTCATACAAGGAAATTAAGAAGATGGCGGCAGGTTTCAAAGAGAAGTTAGGTGAAGGAGGATTTGGCTCTGTCTTTAAGGCAAAGTTACTTAGTGGACCTTTTGTGGCCATCAAAATGTTAGGCAAATCCAAAGGAAATGGACAAGATTTTATCAATGAAGTTGCAACCATTGGAAGAATACATCATCAAAATGTGGTACGGTTAATTGGATTTTGTGTTAGTGGCTCAAAGCGTGCTCTTGTTTATGAATTTATGTCCAATGGATCTCTTGATAAATTTATTTTCTCAAAAGAGAGAAATATACATTTAAGCTATGAAAAGATATATAATATATCAATTGGAGTGGCTCGTGGGATTGCTTATCTCCACCATGGGTGTGAGATGCAGATTTTGCATTTTGACATCAAACCTCATAACATCTTGCTAGATGAAAACTTCATCCCTATGATTTCGGACTTTGGATTGGCAAAGTTAAATCCAATAGATAATAGTATTGTCACAATGACTGGAGCAAGAGGAACCATTGGATATATGGCTCCAGAACTATTTTACAAAAATATTGGAGGAATATCCCATAAAGCTGATGTTTATAGCTTTGGAATGCTTTTGATGGAGATGGCGAGCAGGAGGAAGAATCTAAATCCCCATGTAGACCACTCAAGTCAACTTTACTTTCCAATTTGGATCTATGATCATATCGAAGAAGAGGAAGATATAGATATGGAAGATTTGACTGAAGAGGAAAAGATAATAGCAAAGAAAATGATCATAGTGTCTCTTTGGTGCATACAGTTGAAACCAAGCAATCGACCCTCAATGAATAGAGTAGTGGAAATGCTTGAAGGAGACATTGAAGACTTGGAAATACCTCCAAAACCTACTTTATTTCTAGATGAAATGAGTACAGATGTTGAAACAACAAACTCGACATCGAATGAATTGAACATGTTCTCCTAA 1854 0.39 MWRESAVLVVLLLLLHHISATKDDQEHVCPPSSCGNITNISYPFRLKGDPEECGDKRYELGCENNVTVLYLYSAQYHVKSINYNNYTVRVVDPALQHHNLSSLPLRFLSRSNFSDTYTYTSFYDPGPYQASFVYENGESLTFEHIVFVNCNHSVREKEKYVEIGEWVKWEGKGYAYSIGGDLKAEDLEVGCEVKLVAPTSLSTFDNHSYTSMHTALAYGFEISWIQVACQKHCPDDDSYCYVDSSNQKLQCIKGWAYKVLFGLPFIIVIFIYKWRKRHMSLYENIENYLEQNSLAPIRYSYKEIKKMAAGFKEKLGEGGFGSVFKAKLLSGPFVAIKMLGKSKGNGQDFINEVATIGRIHHQNVVRLIGFCVSGSKRALVYEFMSNGSLDKFIFSKERNIHLSYEKIYNISIGVARGIAYLHHGCEMQILHFDIKPHNILLDENFIPMISDFGLAKLNPIDNSIVTMTGARGTIGYMAPELFYKNIGGISHKADVYSFGMLLMEMASRRKNLNPHVDHSSQLYFPIWIYDHIEEEEDIDMEDLTEEEKIIAKKMIIVSLWCIQLKPSNRPSMNRVVEMLEGDIEDLEIPPKPTLFLDEMSTDVETTNSTSNELNMFS* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0502 617 Pfam Wall-associated receptor kinase galacturonan-binding 29 92 IPR025287 GO:0030247
Pvu1g0502 617 ProSitePatterns Protein kinases ATP-binding region signature. 315 337 IPR017441 GO:0005524
Pvu1g0502 617 Gene3D Transferase(Phosphotransferase) domain 1 384 587 - -
Pvu1g0502 617 Gene3D Phosphorylase Kinase; domain 1 283 383 - -
Pvu1g0502 617 SUPERFAMILY Protein kinase-like (PK-like) 294 580 IPR011009 -
Pvu1g0502 617 ProSiteProfiles Protein kinase domain profile. 309 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0502 617 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 257 602 - -
Pvu1g0502 617 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 6 253 - -
Pvu1g0502 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 429 441 IPR008271 GO:0004672|GO:0006468
Pvu1g0502 617 Pfam Protein kinase domain 312 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0502 617 PANTHER RUST RESISTANCE KINASE LR10-RELATED 6 253 IPR045874 GO:0004672
Pvu1g0502 617 PANTHER RUST RESISTANCE KINASE LR10-RELATED 257 602 IPR045874 GO:0004672
Pvu1g0502 617 SMART serkin_6 309 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0502 Pvu-Chr1 5423765 5430494 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0502 6 594 Receptor kinase-like Gene Family AT5G38260 36.039 1.95e-119 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pvu1g0502 Pkinase 1.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0502 - - vun:114195573 905.975