Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0499 ATGATGTGGAAAGAGAGAGCATTCATGGTGGTACTGCTACTTCTAGTCCACAAAATTCATGGTGGCTGCCCCTCCTCTTCCTGTGGTCAAATCACCAACATCAATTACCCTTTTCGATTCAAAGGCGACCCAGAAGAGTGTGGTGAGGAAGGTTATGAGCTTGGCTGTGAGAATAATGTTACGGTGTTGTATCTGTACTCTGCACAATATCATGTGCAGTCAATAAACTACAAGAACTACACAGTGAGAGTGGTTGATCCTGCTCTTCAACACCATAATCTCTCCTCCCTTCCTCTCCGTTTCCTCTCTCGTTCCAATTTCTCTGACACTTACACTTACACTTCCTTTTACGACTCGGATCCATACCAAGCCGGTCTAAGATCCTATGAAAATTGGGAATTGAGTTTCTCGCATATAGTGTTTGTGAATTGTAACCATTCGGTGGGAGAGAAAGGGAAGTATGTGGAGAGTGGAGAGTGGGTGAAGTGGGAGGGGAAGGGGTATGCATATGCAATTGGTGGAGACCTAAAAGCAGAGGACTTAGAAGTTGGGTGTGAGGTAAAGCTTGTTGCTCCCACTTCTCTCTCCACTTTCGATTACCATTCCTACTCTTCCATTCACACCGCACTCGCCTATGGATTCCAGATTTCATGGATAAAACTCACCTGTCAGAATCTTTGTCCAGATGATGATAGCTATTGCTATTTCGACTCTTCTAACCAGAAGCTTCAATGCCGCCGATCTGGTCTAACACCGCTGGGAGTGCTAATCCTGTATCTAGCAGGTATTCTCATAGGAAGGGCTTACAAAGTTGTGTTTGGATTGCCATTCATAATTGTTATTTTTACATATAAATGGAGAAAAAGACATATGTCAATGTATGGAAATATTGAAAATTACCTTGAACAAAATAGTTTGACACCAATTAGATACTCATACAAGGAAATCAAGAAGATGGCTGTAGGTTTCAAAGAGAAGTTAGGTGAAGGAGGATTTGGCTCTGTCTTTAAGGCAAAGTTGTGCAGTGGGCCTTTTGTGGCCATCAAAATGTTAGGCAAATCGAAAGCAAATGGACAAGATTTTATCAATGAAGTTGCGACCATTGGAAGAATACATCATCAAAATGTGGTACAGTTAATTGGATTTTGTGTTAGTGGCTCAAAGCGTGCTCTTGTTTATGAATTTATGTCCAATGGATCTCTTGATAAATTTATTTTCTCAAAAGAGAGAAATATACATTTAAGCTATGAAAAGATATATAATATGTCAATTGGAGTGGCTCGTGGGATTACTTATCTCCACCATGGGTGTGAGATGCAGATTTTGCATTTTGACATCAAACCTCATAACATCTTACTAGATGAAAACTTCATCCCTAAGGTTTCTGACTTTGGATTGGCAAAGTTATATCCAATAGATAATAGTATCGTCACAATGATTGCAGCAAGAGGAACCATTGGATATATGGCTCCAGAACTATTTTACAAAAATATTGGAGGAATATCCCATAAAGCTGATGTTTATAGCTTTGGAATGCTTTTGATGGAAATGGCGAGCAAGAGGAAGAATCTAAATCCCCATGTAGACCACTCAAGTCAACTTTACTTTCCACTCTGGATCTATGATCATATCGAAGAAGAGGAAGATATAGATATGGAAGATTTGACTGAAGAGAAAAAGATAATAGCAAAGAAAATGATTATAGTGTCTCTTTGGTGCATACAATTAAAACCAATTGATCGACCCTCAATGAATAGAGTAGTGGAAATGCTTGAAGGGGACATTGAAGACTTGGAAATACCTCCAAAGCCTACTTTATTTCCAAATGAAATGAGTAGAGATGGTGAAACAATAAACTCGACATCGAATGAATTGAACTCGTTCTCTTATACATGCAATTGA 1902 0.3922 MMWKERAFMVVLLLLVHKIHGGCPSSSCGQITNINYPFRFKGDPEECGEEGYELGCENNVTVLYLYSAQYHVQSINYKNYTVRVVDPALQHHNLSSLPLRFLSRSNFSDTYTYTSFYDSDPYQAGLRSYENWELSFSHIVFVNCNHSVGEKGKYVESGEWVKWEGKGYAYAIGGDLKAEDLEVGCEVKLVAPTSLSTFDYHSYSSIHTALAYGFQISWIKLTCQNLCPDDDSYCYFDSSNQKLQCRRSGLTPLGVLILYLAGILIGRAYKVVFGLPFIIVIFTYKWRKRHMSMYGNIENYLEQNSLTPIRYSYKEIKKMAVGFKEKLGEGGFGSVFKAKLCSGPFVAIKMLGKSKANGQDFINEVATIGRIHHQNVVQLIGFCVSGSKRALVYEFMSNGSLDKFIFSKERNIHLSYEKIYNMSIGVARGITYLHHGCEMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPIDNSIVTMIAARGTIGYMAPELFYKNIGGISHKADVYSFGMLLMEMASKRKNLNPHVDHSSQLYFPLWIYDHIEEEEDIDMEDLTEEKKIIAKKMIIVSLWCIQLKPIDRPSMNRVVEMLEGDIEDLEIPPKPTLFPNEMSRDGETINSTSNELNSFSYTCN* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0499 633 Gene3D Transferase(Phosphotransferase) domain 1 396 599 - -
Pvu1g0499 633 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 265 617 - -
Pvu1g0499 633 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 17 245 - -
Pvu1g0499 633 SMART serkin_6 321 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0499 633 MobiDBLite consensus disorder prediction 612 633 - -
Pvu1g0499 633 PANTHER RUST RESISTANCE KINASE LR10-RELATED 265 617 IPR045874 GO:0004672
Pvu1g0499 633 PANTHER RUST RESISTANCE KINASE LR10-RELATED 17 245 IPR045874 GO:0004672
Pvu1g0499 633 ProSitePatterns Protein kinases ATP-binding region signature. 327 349 IPR017441 GO:0005524
Pvu1g0499 633 MobiDBLite consensus disorder prediction 611 633 - -
Pvu1g0499 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Pvu1g0499 633 ProSiteProfiles Protein kinase domain profile. 321 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0499 633 Pfam Protein kinase domain 324 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0499 633 Gene3D Phosphorylase Kinase; domain 1 296 395 - -
Pvu1g0499 633 SUPERFAMILY Protein kinase-like (PK-like) 310 592 IPR011009 -
Pvu1g0499 633 Pfam Wall-associated receptor kinase galacturonan-binding 23 86 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0499 Pvu-Chr1 5376702 5383434 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0499 24 606 Receptor kinase-like Gene Family AT5G38260 36.529 3.38e-121 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pvu1g0499 Pkinase 3.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0499 - - vun:114195573 876.315