Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0498 ATGATGTGGAGAGAGAGAGCATTCATGGTGGTACTGCTACTTCTAGTCCACAAAATCCATGGTGGCTGCCCCCCTTCTTCCTGTGGTAAAATCACCAACATCAATCACCCTTTTCGATTAAAAGGCGACCCAGAAAAGTGTGGTGAGAAAAGGTATGAGCTTGGTTGTGAGAATAATGTTACGGTGTTGTATCTGTACTCTGCACAATATCATGTGCAGTCAATAAACTACAAGAAGTACACAGTGAGAGTGGTTGATCCTGCTCTTCAACACCATAATCTCTCCTCCCTTCCTCTCCGTTTCCTCTCTCGCTCCAATTTCTCTGACACTTACACTCACAAATACTTTTACCAGTCGGATCCATACCAAGCCGGTCTAAAAGCCTTTGAGAATTTTGAATCTCTGAGTTTCTCGCATATAGTGTTTGTGAATTGTAAGGATTGGGTGAGAGAGAAAGGGAAGTATGTGGAGAGTGGAGAGTGGGTGAAGTGGGAGGGGAAGGGGTATGCATATGCAATTGGTGGAGACCTAAAAGCAGAGGACTTAGAAGTTGGGTGTGAGGTAAAGCTTGTTGCTCCCACTTCTCTCTCCACTTTCGATTACCATTCCTACTCTTCCATTCACACCGCACTCGCCTATGGATTTGAGATTTCATGGATACAACTAGTCTGTTGGAAACATTGTTCATTTCTCTATACTGTTTGCTATTTCGACTCTTATAATCAGAAGCTTAAATGCGGAAATGGAATACTGGCTCAACTAATAGTGGTTGTAACAAGTTTCAAAGAGAAGTTAGGTGAAGGAGGATTTGGCTCAGTCTTTAAAGCAAAGTTGCGCAGTGGGCCTTCAGTGGCTATCAAAATGTTAGGCAAATTCAAAGGAAATGGACAAGATTTTATCAGTGAAGTTGCAACCATTGGAAGAATACATCATCAAAACGTGGTACGATTAATTGGATTTTGTGTTAGTGGCTCAAAACGTGCTCTTGTCTATGAATTCATGCCCAATGGTTCTCTTGATAAATTTATTTTCTCAAAAGAAATAAATATACATTTAAGCTATGAAAGGATATATAATATATCAATTGGAGTGGCTTGTGGGATTGCTTATCTCCACCATGGGTGTGAGATGCAGATTTTGCATTTTGACATCAAACCCCATAACATCTTACTAGATGAAAACTTCATCCCTAAGGTTTCTGACTTTGGATTGGCGAAGTTATATCCAATAGATAATAACATCGTCACAATGACTGCAACAAGAGGAACTATTGGATATATGGCTCCAGAATTGTTTTATAAAAATATTGGAGGAATATCCCATAAGGCTGATGTTTATAGCTTTGGAATGTTGTTGATGGAAATGGCAAGTAAGAGGAAGAATCTAAATCCTCATGCAGACCACTCAAGTCAAATTTACTTTCCCCTTTGGATCTATGATCATATTAGGGAAGGGGAAGATGTAGATGTCGAAAATGTGACAGAAGAAGAAAATAAAATAGCAAAGAAGATGATCATAGTTGCACTCTGGTGTATACAACTAAAACCAAATGATCGACCCTCAATGAATAAAGTAGTGAAAATGCTTGAAGGAGATATTGAAGAGTTGGAAATACCTCCAAAACCTATTTTATTTCCAGAAGATGAAATAGTGTCAGAGTATCAAACAATCAACTCTTACTAG 1683 0.3904 MMWRERAFMVVLLLLVHKIHGGCPPSSCGKITNINHPFRLKGDPEKCGEKRYELGCENNVTVLYLYSAQYHVQSINYKKYTVRVVDPALQHHNLSSLPLRFLSRSNFSDTYTHKYFYQSDPYQAGLKAFENFESLSFSHIVFVNCKDWVREKGKYVESGEWVKWEGKGYAYAIGGDLKAEDLEVGCEVKLVAPTSLSTFDYHSYSSIHTALAYGFEISWIQLVCWKHCSFLYTVCYFDSYNQKLKCGNGILAQLIVVVTSFKEKLGEGGFGSVFKAKLRSGPSVAIKMLGKFKGNGQDFISEVATIGRIHHQNVVRLIGFCVSGSKRALVYEFMPNGSLDKFIFSKEINIHLSYERIYNISIGVACGIAYLHHGCEMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPIDNNIVTMTATRGTIGYMAPELFYKNIGGISHKADVYSFGMLLMEMASKRKNLNPHADHSSQIYFPLWIYDHIREGEDVDVENVTEEENKIAKKMIIVALWCIQLKPNDRPSMNKVVKMLEGDIEELEIPPKPILFPEDEIVSEYQTINSY* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0498 560 SUPERFAMILY Protein kinase-like (PK-like) 261 530 IPR011009 -
Pvu1g0498 560 Pfam Protein kinase domain 261 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0498 560 PANTHER RUST RESISTANCE KINASE LR10-RELATED 17 245 IPR045874 GO:0004672
Pvu1g0498 560 PANTHER RUST RESISTANCE KINASE LR10-RELATED 259 552 IPR045874 GO:0004672
Pvu1g0498 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 379 391 IPR008271 GO:0004672|GO:0006468
Pvu1g0498 560 SMART serkin_6 259 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0498 560 ProSiteProfiles Protein kinase domain profile. 259 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0498 560 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 259 552 - -
Pvu1g0498 560 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 17 245 - -
Pvu1g0498 560 Pfam Wall-associated receptor kinase galacturonan-binding 23 86 IPR025287 GO:0030247
Pvu1g0498 560 ProSitePatterns Protein kinases ATP-binding region signature. 265 287 IPR017441 GO:0005524
Pvu1g0498 560 Gene3D Phosphorylase Kinase; domain 1 259 337 - -
Pvu1g0498 560 Gene3D Transferase(Phosphotransferase) domain 1 338 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0498 Pvu-Chr1 5328973 5331999 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0498 13 542 Receptor kinase-like Gene Family AT5G38260 34.754 3.04e-104 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pvu1g0498 Pkinase 8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0498 - - pvu:PHAVU_001G048700g 954.125