Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0497 ATGATGTGGAGAGAGAGAGCAGTGTTGGTGGTACTGCTACTTCTACTCCACCATATTTCTGCTACCAAGGACGACCTAGAACACGTTTGTCCCCCTTCTTCCTGTGGTAAAATCAGCAACATCAGTTATCCATTTCGATTAAAAGGCGACCCAGAAAAGTGTGGTGAGGAAAGGTATGAACTTGGTTGTGAGAATAACGTTACGGTGTTGTATCTGTACTCTGCAAAATATCATGTGCAGTCAATAAACTACAATAACTACACAGTGAGAGTGGTTGATCCTGCTCTTCAACACCATAATCTCTCCTCCCTTCCTCTCCGTTCCCTCTCTCGCTCCAATTTCTCTGACACTTACGCTTACTACACGGATTCATACCAAGCCGGTCTAAGAGCCTCTGTAAATTGGGAATCTCTGAGTTTCTCGCATATAGTGTTTGTGAATTGTAAGGATTGGGTGAGAGAGAAAGGGAAGTATGTGGAGAGTGGAGAGTGGGTGAAATGGGAGGGGAAGGGGTATGCATATGCAATTGGTGGAGACCTAAAAGCAGAGGACTTAGAAGTTGGGTGTGAGGTAAAGCTTGTTGCTCCCACTTCTCTCTCCACTTTCGATTACCATTCCTACTCTTCCATGCACACTGCACTCGCCTATGGATTTGAGATATCATGGATAAAACTTGCCTGTCACAAACATTGTTCACTTTCCGATAGATATTGCTATTTGGACTCTTCTAACCAGAAGCTTCAATGCCGGTCATCATTTTATGAATCACTGGAATTCAGTATACCAGGTTTCAAAGAGAAGTTAGGTGAAGGAGGATTTGGCTTTGTCTTTAAGGCAAAGTTACTTAGTGGACCTTCTGTGGCCATCAAAATGTTAGGCAAATCCAAAGGAAATGGACAAGATTTTATCAGTGAAGTTGCAACCATTGGAAGAATACATCATCAAAATGTGGTACGGTTAATTGGATTTTGTGTTAGTGGCTCAAAGCGTGCTCTTATCTATGAATTCATGCCCAATGGATCTCTTGATAAATTTATTTTCTCAAAAGATGGAAGTGTACATTTAAGCTATGAAAAGATATATAATATATCAATAGGAGTGGCTCGTGGGATTGCTTATCTCCACCATGGGTGTGAGATGCAAATTTTGCATTTTGACATCAAACCCCATAACATCTTACTAGATGAAAACTTCATCCCTAAGGTTTCTGACTTTGGATTGGCAAATTTATATACAATAGATAATAGCATCGTCACAATGACTGCAGCAAGAGGAACCATTGGATATATGGCTCCAGAATTGTTTTATAAAAATATTGGAGGAATATCCTATAAGGCTGATGTTTATAGCTTCGGAATGTTATTGATGGAGATGGCAAGTAAGAGGAAGAATCTAAATACTCATGCAGATCACTCAAGTCAAATTTACTTTCCCCTTTGGATCTATGATCATATTCGAAAAGAGGAAGATGTAGATATCGAAGATGTAACAGAGGAGGAAAATAAAATAGCAAAGAAAATGATCATAGTTGCACTATGGTGTATACAACTAAAACCAAATGATCGACCCTCAATGAATAGAGTAGTGGAAATGCTTGAAGGAGATATTGAAGAATTAGAAATACCTCCAAAACCTATCCTATTTCCAGATGAAACAGTGACGGAGGATCAAACAATCAAATCTAGCTAG 1689 0.3949 MMWRERAVLVVLLLLLHHISATKDDLEHVCPPSSCGKISNISYPFRLKGDPEKCGEERYELGCENNVTVLYLYSAKYHVQSINYNNYTVRVVDPALQHHNLSSLPLRSLSRSNFSDTYAYYTDSYQAGLRASVNWESLSFSHIVFVNCKDWVREKGKYVESGEWVKWEGKGYAYAIGGDLKAEDLEVGCEVKLVAPTSLSTFDYHSYSSMHTALAYGFEISWIKLACHKHCSLSDRYCYLDSSNQKLQCRSSFYESLEFSIPGFKEKLGEGGFGFVFKAKLLSGPSVAIKMLGKSKGNGQDFISEVATIGRIHHQNVVRLIGFCVSGSKRALIYEFMPNGSLDKFIFSKDGSVHLSYEKIYNISIGVARGIAYLHHGCEMQILHFDIKPHNILLDENFIPKVSDFGLANLYTIDNSIVTMTAARGTIGYMAPELFYKNIGGISYKADVYSFGMLLMEMASKRKNLNTHADHSSQIYFPLWIYDHIRKEEDVDIEDVTEEENKIAKKMIIVALWCIQLKPNDRPSMNRVVEMLEGDIEELEIPPKPILFPDETVTEDQTIKSS* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0497 562 ProSiteProfiles Protein kinase domain profile. 262 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0497 562 PANTHER RUST RESISTANCE KINASE LR10-RELATED 6 254 IPR045874 GO:0004672
Pvu1g0497 562 PANTHER RUST RESISTANCE KINASE LR10-RELATED 262 556 IPR045874 GO:0004672
Pvu1g0497 562 Gene3D Transferase(Phosphotransferase) domain 1 337 541 - -
Pvu1g0497 562 ProSitePatterns Serine/Threonine protein kinases active-site signature. 382 394 IPR008271 GO:0004672|GO:0006468
Pvu1g0497 562 SUPERFAMILY Protein kinase-like (PK-like) 245 533 IPR011009 -
Pvu1g0497 562 ProSitePatterns Protein kinases ATP-binding region signature. 268 290 IPR017441 GO:0005524
Pvu1g0497 562 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 262 556 - -
Pvu1g0497 562 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 6 254 - -
Pvu1g0497 562 Pfam Protein kinase domain 265 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0497 562 Gene3D Phosphorylase Kinase; domain 1 239 336 - -
Pvu1g0497 562 SMART serkin_6 264 532 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0497 562 Pfam Wall-associated receptor kinase galacturonan-binding 30 93 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0497 Pvu-Chr1 5316958 5323429 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0497 264 555 Receptor kinase-like Gene Family AT5G38280 51.678 1.98e-104 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pvu1g0497 Pkinase 6.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0497 - - pvu:PHAVU_001G048700g 1123.61