Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0496 ATGAGAAACAGTTTGGACATGATGTGGAGAGAGAGAGCATTCATGGTGGTACTGCTACTTCTAGTCCACAAAATTCATGGTGGCTGCCCCTCCTCTTCCTGTGGTCAAATCACCAACATCAATTACCCTTTTCGATTCAAAGGCGACCCAGAAGAGTGTGGTGAGGAAAGGTATGAGCTTGGTTGTGAGAATAACGTTACGGTGTTGTATCTCTACTCTGGAAAATATCATGTGCAATCAATAAACTACAAGAACTACACAGTGAGAGTGGTTGATCCTGCTCTTCAACACCATAATCTCTCCTCCCTTCCTCTCCGTTTCCTCTCTCGCTCCAATTTCTCTGACACTTACGCTTACTACACGGATCCATACCAAGCTGGTCTAAGAGCCTCTGTAAATTGGGAATCTCTGAGTTTCTCGCATATAGTGTTGGTGAATTGTAACGATTCGGTGGGAGAGAAAGGGAAGTATGTGGAGAGTGGAGAGTGGGTGAAGTGGGAGGGGAAGGGGTATTCATATGCAATTGGTGGAGACCTAAAAGCAGAGGACTTAGAAGTTGGGTGTGAGGTAAAGCTTGTTGCTCCCACTTCTCTCTCCACTTTCGATAACCATTCCTACTCTTCCATGCACACCGCACTCGCCTATGGATTCGAGATTTCATGGATAAAACTACCCTGTCAGAAACATTGTTCACTTTCCTATAGAGATTGCTATTTCGACTCTTCTAACCAGAAGCTTAATTGCGGGTATGGAATACTGGAAGAACTATTAATGGATGTAACAGGTTTCAAAGAGAAGTTAGGTGAAGGAGGATTTGGCTCTGTCTTTAAGGCAAAGTTGCACAGTGGGCCTTCTGTTGCCATCAAAATGTTAGACAAATCCAAAGCAAATGGACAAGATTTTATATGTAAAGTTGCAACCATTGGAAGAATACATCATCAAAATGTGGTACAAATAATTGGATTTTGTGCTAGTGGCTCAAAAC 985 0.4294 MRNSLDMMWRERAFMVVLLLLVHKIHGGCPSSSCGQITNINYPFRFKGDPEECGEERYELGCENNVTVLYLYSGKYHVQSINYKNYTVRVVDPALQHHNLSSLPLRFLSRSNFSDTYAYYTDPYQAGLRASVNWESLSFSHIVLVNCNDSVGEKGKYVESGEWVKWEGKGYSYAIGGDLKAEDLEVGCEVKLVAPTSLSTFDNHSYSSMHTALAYGFEISWIKLPCQKHCSLSYRDCYFDSSNQKLNCGYGILEELLMDVTGFKEKLGEGGFGSVFKAKLHSGPSVAIKMLDKSKANGQDFICKVATIGRIHHQNVVQIIGFCASGSK 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0496 328 Pfam Protein tyrosine and serine/threonine kinase 263 325 IPR001245 GO:0004672|GO:0006468
Pvu1g0496 328 PANTHER RUST RESISTANCE KINASE LR10-RELATED 260 328 IPR045874 GO:0004672
Pvu1g0496 328 PANTHER RUST RESISTANCE KINASE LR10-RELATED 22 247 IPR045874 GO:0004672
Pvu1g0496 328 ProSiteProfiles Protein kinase domain profile. 261 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0496 328 Gene3D Phosphorylase Kinase; domain 1 237 328 - -
Pvu1g0496 328 ProSitePatterns Protein kinases ATP-binding region signature. 267 289 IPR017441 GO:0005524
Pvu1g0496 328 Pfam Wall-associated receptor kinase galacturonan-binding 29 92 IPR025287 GO:0030247
Pvu1g0496 328 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 260 328 - -
Pvu1g0496 328 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 22 247 - -
Pvu1g0496 328 SUPERFAMILY Protein kinase-like (PK-like) 263 328 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0496 Pvu-Chr1 5299137 5301240 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0496 263 328 Receptor kinase-like Gene Family AT1G66980 51.515 1.08e-15 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pvu1g0496 PK_Tyr_Ser-Thr 1.3e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0496 - - pvu:PHAVU_001G0486000 670.618