Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0489 ATGATGGTTGCAGGTTTCAAAGAGAAGTTAGGTGAAGGAGGATTTGGCTCTGTTTTTAAGGCAAAGTTGCGCAGTGGACCTTCTGTGGCCATCAAAATATTGAACGAATCCAAAGGAAATGGACAAGATTTTATCAGTGAAGTTGCAACCATTGGAAGAATACATCATCAAAATGTGGTACAATTAATTGGATTTTGTGTTAGTGGCTCAAAACGTGCTCTTGTTTATGAATTCATGCCCAATGGATCTCTTGATAAATTTATTTTCTCAAAAGAGAGAAATATACATTTAAGCTATGAAAAGATATATAATATATCAATCGGAGTGGCTCGTGGGATTGCTTATCTCCACCATGGGTGTGAGATGCAGATTTTGCATTTTGACATTAAACCTCATAACATCTTACTAGATGAAAACTTCATCCCTAAGGTTTCTGACTTTGGATTGGCAAAGTTATATCCAATAGATAATAGCATTGTCACAATGACTGTAGCAAGAGGAACCATTGGATATATGGCTCCTGAATTGTTTTATAAAAATATTGGAGGAATATCCCATAAGGCTGATGTTTATAGCTTCGGAATGTTGTTGATGGAGATGACAAGTAAGAGAAAGAATCTAAATCCTCATGCAGATCACTCAAGTCAACTTTACTTTCCCCTTTGGATCTATGATCATATTAGGGAAGAGAAAGATGCAGATATTGAAGATGTGACAGAAGAAGAAAATAAAATAGCAAAGAAGATGATCATAGTTGCACTATGGTGTATACAACTAAAACCAAATGATCGACCCTCAATGAATAGAGTAGTGGAAATGCTTGAAGGAGATATTGAAGACTTGGAAATACCTCCAAAACCTATTCTATTTCCAGATGAAACAGTGACACAGGATCAAACAATCAACTCTAGCTAG 915 0.3585 MMVAGFKEKLGEGGFGSVFKAKLRSGPSVAIKILNESKGNGQDFISEVATIGRIHHQNVVQLIGFCVSGSKRALVYEFMPNGSLDKFIFSKERNIHLSYEKIYNISIGVARGIAYLHHGCEMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPIDNSIVTMTVARGTIGYMAPELFYKNIGGISHKADVYSFGMLLMEMTSKRKNLNPHADHSSQLYFPLWIYDHIREEKDADIEDVTEEENKIAKKMIIVALWCIQLKPNDRPSMNRVVEMLEGDIEDLEIPPKPILFPDETVTQDQTINSS* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0489 304 SUPERFAMILY Protein kinase-like (PK-like) 7 275 IPR011009 -
Pvu1g0489 304 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Pvu1g0489 304 SMART serkin_6 4 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0489 304 Gene3D Phosphorylase Kinase; domain 1 4 82 - -
Pvu1g0489 304 ProSitePatterns Protein kinases ATP-binding region signature. 10 32 IPR017441 GO:0005524
Pvu1g0489 304 PIRSF ILK 5 282 - -
Pvu1g0489 304 Gene3D Transferase(Phosphotransferase) domain 1 83 286 - -
Pvu1g0489 304 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 2 298 - -
Pvu1g0489 304 Pfam Protein kinase domain 7 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0489 304 PANTHER RUST RESISTANCE KINASE LR10-RELATED 2 298 IPR045874 GO:0004672
Pvu1g0489 304 ProSiteProfiles Protein kinase domain profile. 4 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0489 Pvu-Chr1 5231377 5232688 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0489 2 295 Receptor kinase-like Gene Family AT5G38280 51.000 2.68e-109 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pvu1g0489 Pkinase 2.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0489 - - pvu:PHAVU_001G048000g 608.216