Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0488 ATGTTTAAATATAAATATCTAACTTGGATTTGTTTGCACTTGAATTCAGTGAGAAACAGTCTGGACATGATGTGGAGAGAGAGAGCAGTGTTGGTGGTACTGCTACTTCTACTCCACCATATTTCTGCTACCAAGGACCACCAAGAACACGTTTGTCCCCCTTCTTCCTGTGGTAAAATCAGCAACATCAGTTATCCATTTCGATTAAAAGGCGACCCAGAAAAGTGTGGTGAGGAAAGGTATGAACTTGGTTGTGAGCATAACTTTACGGTGTTGTATCTGTACTCTGGACAATATCATGTGAAGTCAATAAACTACAAGAACTACACAGTGAGAGTTGTTGATCCTGCTCTGCAGCACCATAATCTCTCCTCCCTTCCTCTCCGTTTCCTCTCTCGCTCCAATTTCTCTGACACTTACACTTCCTTTTACCACTCGAATCCATACCAAGCCGGTCTAGATGCCTCTATAAATTGGGAATCTCTGAGTTTCTCGCATATAGTGTTTGTGAATTGTAACCATTCGGTGAGAGAGAAAGAGAAGTATGTGGAGAGTGGAGAGTGGGTGAAGTGGGAGGGGAAGGGGTATTCATATGCAATTGGTGGAGACCTAAAAGCAGAGGACTTAGAAGTTGGGTGTGAGGTAAAGCTTGTTGCTCCCACTTCTCTCTCCACTTTCGATAACCATTCCTACTCTTCCATTCACACCGCACTCGCCTATGGATTCGAGATTTCATGGATACAACTCGTCTGTCAGAAACATTGTCCAGATGATGATAGAGATTGCTATGTCGACTCTTCTAACCACAAGCTTCAATGCATCAAAGGCTCATTTAGTCTGCCACTGCTGGAAGTGCTAAAATTCTGTATACCAGGTATTCTCATGTATATCTCTATATTATGGGTCTACAAACTTTTGTTTGGATTGCCATTTTTAATTGTTATTTTTATATGTAAATGGAGAAAAAGACATACATCAATGTATGAAAATATTGAAAATTACCTTCAACAAAATAGCTTGGCACCTATTAGATATTCATATAAGGAAATCAAGAAAATGTCTGCTGGTTTCAAAGAGAAGTTAGGTGAAGGAGGATTTGGCTATGTCTTTAAGGCAAAGTTGTGCAGTGGGCCTTCTGTGGCCATCAAAATGTTAGGCAAATCCAAAGCAAATGGACAAGATTTTATCAATGAAGTTGCGACTATTGGAAGAATACATCATCAAAATGTGGTACGGTTAATTGGATTTTGTGTTAGTGGCTCAAAGCGTGCTCTTGTTTATGAATTTATGCCCAATGGATCTCTTGATAAATTTATTTTCTCAAAAGAGAGAAATATACATTTAAGCTATGAAAATGTATATAATATATCAATTGGAGTGGCTCGTGGGATTGCTTATCTCCACCATGGGTGTGAGATGCAGATTTTGCATTTTGACATCAAACCTCATAACATCTTACTAGATGAAAACTTTATCCCTAAGGTTTCTGACTTTGGATTGGCAAAGTTATATCCAATAGATAATAGTATCGTCACAATGACTATAGCAAGAGGAACCATTGGATATATGGCTCCAGAACTATTTTACAAAAATATTGGAGGAATATCCCATAAAGCTGATGTTTATAGCTTTGGAATGCTTTTGATGGAGATGGCGAGCAAGAGGAAGAATCTAAATCCCCATGTAGACCACTCAAGTCAACTTTACTTTCCACTTTGGATCTATGATCATATCAAAGATGAGGAAGATATAGATAAGGAATATTTGACTAAAGAGGAAAAGATAATAGCAAAGAAAATGATCATAGTGTCTCTTTGGTGCATACAATTGAAACCAAGCGATCGACCCTCAATGAATAGAGTAGTGGAAATGCTTGAAGGAGACATTGAAGACTTGGAAATACCTCCAAAGCCTGCTTTATTTCTAGATGAATTGAGTAGAGATGGTGAAACAATAAACTCGACATCGAATGAATTGAACTCCTTCTCCTAA 1992 0.3835 MFKYKYLTWICLHLNSVRNSLDMMWRERAVLVVLLLLLHHISATKDHQEHVCPPSSCGKISNISYPFRLKGDPEKCGEERYELGCEHNFTVLYLYSGQYHVKSINYKNYTVRVVDPALQHHNLSSLPLRFLSRSNFSDTYTSFYHSNPYQAGLDASINWESLSFSHIVFVNCNHSVREKEKYVESGEWVKWEGKGYSYAIGGDLKAEDLEVGCEVKLVAPTSLSTFDNHSYSSIHTALAYGFEISWIQLVCQKHCPDDDRDCYVDSSNHKLQCIKGSFSLPLLEVLKFCIPGILMYISILWVYKLLFGLPFLIVIFICKWRKRHTSMYENIENYLQQNSLAPIRYSYKEIKKMSAGFKEKLGEGGFGYVFKAKLCSGPSVAIKMLGKSKANGQDFINEVATIGRIHHQNVVRLIGFCVSGSKRALVYEFMPNGSLDKFIFSKERNIHLSYENVYNISIGVARGIAYLHHGCEMQILHFDIKPHNILLDENFIPKVSDFGLAKLYPIDNSIVTMTIARGTIGYMAPELFYKNIGGISHKADVYSFGMLLMEMASKRKNLNPHVDHSSQLYFPLWIYDHIKDEEDIDKEYLTKEEKIIAKKMIIVSLWCIQLKPSDRPSMNRVVEMLEGDIEDLEIPPKPALFLDELSRDGETINSTSNELNSFS* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0488 663 SMART serkin_6 355 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0488 663 Pfam Protein kinase domain 358 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0488 663 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 297 647 - -
Pvu1g0488 663 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 26 274 - -
Pvu1g0488 663 SUPERFAMILY Protein kinase-like (PK-like) 341 626 IPR011009 -
Pvu1g0488 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Pvu1g0488 663 PANTHER RUST RESISTANCE KINASE LR10-RELATED 297 647 IPR045874 GO:0004672
Pvu1g0488 663 PANTHER RUST RESISTANCE KINASE LR10-RELATED 26 274 IPR045874 GO:0004672
Pvu1g0488 663 ProSitePatterns Protein kinases ATP-binding region signature. 361 383 IPR017441 GO:0005524
Pvu1g0488 663 Gene3D Phosphorylase Kinase; domain 1 328 429 - -
Pvu1g0488 663 Gene3D Transferase(Phosphotransferase) domain 1 430 633 - -
Pvu1g0488 663 Pfam Wall-associated receptor kinase galacturonan-binding 52 115 IPR025287 GO:0030247
Pvu1g0488 663 ProSiteProfiles Protein kinase domain profile. 355 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0488 Pvu-Chr1 5208331 5212421 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0488 29 640 Receptor kinase-like Gene Family AT5G38260 35.413 1.56e-120 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pvu1g0488 Pkinase 4.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0488 - - vun:114195573 901.738