Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0487 ATGTCAATGTATGAAAATATTGAAAGTTACCTTGAACAAAATAGCTTGGCACCTATTAGATATTCATACAAGGAAATCAAGAAGATGGCTGCAGGTTTCAAAGAGAAGTTAGGTGAAGGAGGATTTGGCTATGTCTTTATGGCAAAGTTGCGTAGTGGACCTTCTGTGGCCATCAAAATATTGAACAAATCCAAAGGAAATGGACAAGATTTTATCAGTGAAGTTGCAACCATTGGAAGAATACATCATCAAAATGTGGTACAATTAATTGGATTTTGTGTTAGTGGCTCAAAACGTGCTCTTGTCTATGAATTCATGCCCAATGGATCTCTTGATAAATTTATTTTCTCAAAAGAGAGAAATACACATTTAAGCTATGAAAAGATATATAATATATCAATCGGAGTGGCTCGTGGGATTGCTTATCTCCACCATGGGTGTGAGATGCAGATTTTGCATTTTGACATTAAACCCCATAACATCTTACTAGATGAAAACTTCATTCCTAAGGTTTCTGACTTTGGATTGGTAAAGTTATATCCAATAGATAATAGCATTGTCACAATGACTGTAGCAAGAGGAACCATTGGATATATGGCTCCAGAATTGTTTTATAAAAATATTGGAGGAATATCCCATAAGGCTGATGTTTATAGCTTTGGAATGTTGTTGATGGAGATGACAAGTAAGAGGAAGAATCTAAATCCTCACGCAGATCACTCAAGTCAACTTTACTTTCCCCTTTGGATCTATGATCATATTAGGGAAGAGAAAGATGCAGATATCGAAGATGTGACAGAAGAAGAAAATAAAATAGCAAAGAAGATGATTATAGTTGCACTATGGTGCATACAACTAAAACCAAATGATCGACCCTCAATGAACATAGTAATGGAAATGCTTGAAGGAGATATTGAAGACTTGGAAATACCTCCAAAACCTATTCTATTTCCAGATGAAACAGTGACAAAGGATCAAACAATCAACTCTAGCTAG 996 0.3534 MSMYENIESYLEQNSLAPIRYSYKEIKKMAAGFKEKLGEGGFGYVFMAKLRSGPSVAIKILNKSKGNGQDFISEVATIGRIHHQNVVQLIGFCVSGSKRALVYEFMPNGSLDKFIFSKERNTHLSYEKIYNISIGVARGIAYLHHGCEMQILHFDIKPHNILLDENFIPKVSDFGLVKLYPIDNSIVTMTVARGTIGYMAPELFYKNIGGISHKADVYSFGMLLMEMTSKRKNLNPHADHSSQLYFPLWIYDHIREEKDADIEDVTEEENKIAKKMIIVALWCIQLKPNDRPSMNIVMEMLEGDIEDLEIPPKPILFPDETVTKDQTINSS* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0487 331 ProSitePatterns Protein kinases ATP-binding region signature. 37 59 IPR017441 GO:0005524
Pvu1g0487 331 SMART serkin_6 31 301 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0487 331 PIRSF ILK 12 309 - -
Pvu1g0487 331 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Pvu1g0487 331 Pfam Protein kinase domain 34 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0487 331 SUPERFAMILY Protein kinase-like (PK-like) 16 302 IPR011009 -
Pvu1g0487 331 Gene3D Transferase(Phosphotransferase) domain 1 106 313 - -
Pvu1g0487 331 ProSiteProfiles Protein kinase domain profile. 31 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu1g0487 331 Gene3D Phosphorylase Kinase; domain 1 5 105 - -
Pvu1g0487 331 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 325 IPR045874 GO:0004672
Pvu1g0487 331 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 1 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0487 Pvu-Chr1 5191301 5192296 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0487 20 322 Receptor kinase-like Gene Family AT5G38280 51.133 4.31e-112 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Pvu1g0487 Pkinase 7.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0487 - - pvu:PHAVU_001G048000g 588.956